GCF_000204415.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Archaea
Comparison to close relatives: Methanothrix soehngenii
Comparison to close relatives: Methanothrix thermoacetophila
Comparison to close relatives: Methanothrix harundinacea
Comparison to close relatives: Methanohalophilus portucalensis
Comparison to close relatives: Methanohalophilus mahii
Comparison to close relatives: Methanohalophilus halophilus
Comparison to close relatives: Methanomethylovorans hollandica
Comparison to close relatives: Methanosalsum zhilinae
Comparison to close relatives: Methanococcoides burtonii
Comparison to close relatives: Methermicoccus shengliensis
Comparison to close relatives: Methanolobus chelungpuianus
Comparison to close relatives: Methanosalsum natronophilum
Comparison to close relatives: Methanolobus zinderi
Comparison to close relatives: Methanosarcina vacuolata
Comparison to close relatives: Methanosarcina horonobensis
Comparison to close relatives: Methanococcoides orientis
Comparison to close relatives: Methanococcoides methylutens
Comparison to close relatives: Methanolobus halotolerans
Comparison to close relatives: Methanomethylovorans thermophila
Comparison to close relatives: Methanosarcina baltica
Comparison to close relatives: Methanolobus sediminis
Comparison to close relatives: Methanosarcina soligelidi
Comparison to close relatives: Methanolobus mangrovi
Comparison to close relatives: Methanosarcina subterranea
Comparison to close relatives: Methanomethylovorans uponensis
Comparison to close relatives: Methanohalophilus levihalophilus
Comparison to close relatives: Methanosarcina acetivorans
Comparison to close relatives: Methanosarcina mazei
Comparison to close relatives: Methanosarcina semesiae
Comparison to close relatives: Methanosarcina flavescens
Comparison to close relatives: Methanolobus bombayensis
Comparison to close relatives: Methanosarcina siciliae
Comparison to close relatives: Methanolobus psychrotolerans
Comparison to close relatives: Methanococcoides alaskense
Comparison to close relatives: Methanosarcina lacustris
Comparison to close relatives: Methanolobus profundi
Comparison to close relatives: Methanosarcina spelaei
Comparison to close relatives: Methanohalobium evestigatum
Comparison to close relatives: Methanosarcina barkeri
Comparison to close relatives: Methanolobus oregonensis
Comparison to close relatives: Methanolobus taylorii
Comparison to close relatives: Methanosarcina thermophila
Comparison to close relatives: Methanolinea tarda
Comparison to close relatives: Methanolobus vulcani
Comparison to close relatives: Methanoculleus marisnigri
Comparison to close relatives: Methanoculleus thermophilus
Comparison to close relatives: Methanocella arvoryzae
Comparison to close relatives: Methanolobus tindarius
Comparison to close relatives: Methanosphaerula palustris
Comparison to close relatives: Methanoregula boonei
Carbon source: starch
CAZyme: GH94
CAZyme: GH26
CAZyme: GH43
CAZyme: GH133
CAZyme: GH13
CAZyme: GH73
CAZyme: GH57
CAZyme: GH105
CAZyme: GH0
CAZyme: GT84
CAZyme: GT4
CAZyme: GT2
CAZyme: GT13
CAZyme: GT66
CAZyme: GT35
CAZyme: GT3
CAZyme: GT22
CAZyme: GT1
CAZyme: GT0
CAZyme: GT20
CAZyme: PL1
CAZyme: PL12
CAZyme: CE8
CAZyme: CE9
CAZyme: CE14

GCF_000204415.1 (CAZyme)
CAZyme: CBM50
Occurance: 10

GCF_000204415.1 (CAZyme)
CAZyme: CBM32
Occurance: 1

GCF_000204415.1 (CAZyme)
CAZyme: CBM5
Occurance: 1

GCF_000204415.1 (CAZyme)
CAZyme: CBM6
Occurance: 1

GCF_000204415.1 (Pathway)
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Metabolic module: M00005

GCF_000204415.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCF_000204415.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCF_000204415.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCF_000204415.1 (Pathway)
Pathway: Ectoine biosynthesis, aspartate => ectoine
Metabolic module: M00033

GCF_000204415.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCF_000204415.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCF_000204415.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCF_000204415.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCF_000204415.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCF_000204415.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCF_000204415.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, bacteria
Metabolic module: M00364

GCF_000204415.1 (Pathway)
Pathway: C10-C20 isoprenoid biosynthesis, archaea
Metabolic module: M00365

GCF_000204415.1 (Pathway)
Pathway: Acetyl-CoA pathway, CO2 => acetyl-CoA
Metabolic module: M00422

GCF_000204415.1 (Pathway)
Pathway: Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Metabolic module: M00527

GCF_000204415.1 (Pathway)
Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
Metabolic module: M00570

GCF_000204415.1 (Pathway)
Pathway: Pentose phosphate pathway, archaea, fructose 6P => ribose 5P
Metabolic module: M00580

GCF_000204415.1 (Pathway)
Pathway: Coenzyme F430 biosynthesis, sirohydrochlorin => coenzyme F430
Metabolic module: M00836

GCF_000204415.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCF_000204415.1 (Pathway)
Pathway: Heme biosynthesis, archaea, siroheme => heme
Metabolic module: M00847

GCF_000204415.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCF_000204415.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCF_000204415.1 (Pathway)
Pathway: Methanofuran biosynthesis
Metabolic module: M00935

GCF_000204415.1 (Pathway)
Pathway: Pentose bisphosphate pathway (nucleoside degradation), archaea, nucleoside/NMP => 3-PGA/glycerone phosphate
Metabolic module: M00968

GCF_000204415.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCF_000204415.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCF_000204415.1 (Pathway)
Pathway: Methanogenesis, CO2 => methane
Metabolic module: M00567

GCF_000204415.1 (Pathway)
Pathway: Methanogenesis, acetate => methane
Metabolic module: M00357

GCF_000204415.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCF_000204415.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCF_000204415.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCF_000204415.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCF_000204415.1 (Pathway)
Pathway: Acetate to acetyl-CoA
Metabolic module: MF0075

GCF_000204415.1 (Pathway)
Pathway: Methanogenesis - methyl-coM
Metabolic module: MF0099

GCF_000204415.1 (Pathway)
Pathway: Methanogenesis from carbon dioxide
Metabolic module: MF0100

GCF_000204415.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 1
Relative abundance (%): 0.03

GCF_000204415.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0.3
Relative abundance (%): 0

GCF_000204415.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000204415.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 13
Relative abundance (%): 0.1

GCF_000204415.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0.6
Relative abundance (%): 0.08

GCF_000204415.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 1.8
Relative abundance (%): 8.4

GCF_000204415.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.28

GCF_000204415.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 1.1
Relative abundance (%): 1.81

GCF_000204415.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 1.9
Relative abundance (%): 2.46

GCF_000204415.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 3.8
Relative abundance (%): 0.3

GCF_000204415.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0.2
Relative abundance (%): 0.05

GCF_000204415.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 25.2
Relative abundance (%): 3.99

GCF_000204415.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 16.2
Relative abundance (%): 1.66

GCF_000204415.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 2.4
Relative abundance (%): 1.45

GCF_000204415.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 3
Relative abundance (%): 2.47

GCF_000204415.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCF_000204415.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.01

GCF_000204415.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000204415.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000204415.1 (MAGs)
MAGs: GCA_002496465.1_ASM249646v1_genomic.fna
Ecosystem: Generic

GCF_000204415.1 (MAGs)
MAGs: GCA_002496085.1_ASM249608v1_genomic.fna
Ecosystem: Generic

GCF_000204415.1 (MAGs)
MAGs: GCA_012517695.1_ASM1251769v1_genomic.fna
Ecosystem: Anaerobic_digester

GCF_000204415.1 (MAGs)
MAGs: 3300009767_29.fna
Ecosystem: Generic

GCF_000204415.1 (MAGs)
MAGs: 3300013290_5.fna
Ecosystem: Generic

GCF_000204415.1 (MAGs)
MAGs: 3300022177_27.fna
Ecosystem: Generic

GCF_000204415.1 (MAGs)
MAGs: 3300022181_40.fna
Ecosystem: Generic

GCF_000204415.1 (MAGs)
MAGs: 3300025677_24.fna
Ecosystem: Generic

GCF_000204415.1 (MAGs)
MAGs: 3300025682_24.fna
Ecosystem: Generic

GCF_000204415.1 (MAGs)
MAGs: 3300028622_14.fna
Ecosystem: Generic

GCF_000204415.1 (MAGs)
MAGs: Go_UH_bin_176.fasta
Ecosystem: Wastewater_treatment_facility_(Germany)