GCF_000011005.1
type: Item
Protologue of the species: no current description - please contribute here
Instance of: Genome Assembly Accession
GTDB: Archaea
Comparison to close relatives: Methanocella paludicola
Comparison to close relatives: Methanocella conradii
Comparison to close relatives: Methanocella arvoryzae
Comparison to close relatives: Methanothrix soehngenii
Comparison to close relatives: Methanothrix harundinacea
Comparison to close relatives: Methanomethylovorans hollandica
Comparison to close relatives: Methanoculleus marisnigri
Comparison to close relatives: Methanothrix thermoacetophila
Comparison to close relatives: Methanoculleus taiwanensis
Comparison to close relatives: Methanosarcina vacuolata
Comparison to close relatives: Methanomethylovorans thermophila
Comparison to close relatives: Methanoculleus chikugoensis
Comparison to close relatives: Methanomethylovorans uponensis
Comparison to close relatives: Methanosarcina siciliae
Comparison to close relatives: Methanoculleus hydrogenitrophicus
Comparison to close relatives: Methanolinea tarda
Comparison to close relatives: Methanoculleus thermophilus
Comparison to close relatives: Methanoculleus sediminis
Comparison to close relatives: Methanoculleus palmolei
Comparison to close relatives: Methanosarcina semesiae
Comparison to close relatives: Methanosarcina lacustris
Comparison to close relatives: Methanosphaerula palustris
Comparison to close relatives: Methanosarcina subterranea
Comparison to close relatives: Methanococcoides burtonii
Comparison to close relatives: Methanofollis liminatans
Comparison to close relatives: Methanogenium cariaci
Comparison to close relatives: Methanogenium frigidum
Comparison to close relatives: Methanolobus zinderi
Comparison to close relatives: Methanosarcina flavescens
Comparison to close relatives: Methanolacinia petrolearia
Comparison to close relatives: Methermicoccus shengliensis
Comparison to close relatives: Methanosarcina acetivorans
Comparison to close relatives: Methanosarcina horonobensis
Comparison to close relatives: Methanolobus mangrovi
Comparison to close relatives: Methanoculleus horonobensis
Comparison to close relatives: Methanogenium marinum
Comparison to close relatives: Methanoculleus submarinus
Comparison to close relatives: Methanohalophilus mahii
Comparison to close relatives: Methanoregula boonei
Comparison to close relatives: Methanosalsum natronophilum
Comparison to close relatives: Methanolobus sediminis
Comparison to close relatives: Methanohalobium evestigatum
Comparison to close relatives: Methanohalophilus halophilus
Comparison to close relatives: Methanolobus bombayensis
Comparison to close relatives: Methanococcoides orientis
Comparison to close relatives: Methanosalsum zhilinae
Comparison to close relatives: Methanolobus psychrotolerans
Comparison to close relatives: Methanococcoides methylutens
Comparison to close relatives: Methanospirillum hungatei
Comparison to close relatives: Methanolobus oregonensis
CAZyme: GH43
CAZyme: GH6
CAZyme: GH3
CAZyme: GH0
CAZyme: GH15
CAZyme: GH133
CAZyme: GH33
CAZyme: GH57
CAZyme: GH5
CAZyme: GH13
CAZyme: GH105
CAZyme: GT2
CAZyme: GT66
CAZyme: GT4
CAZyme: GT0
CAZyme: GT61
CAZyme: GT20
CAZyme: CE14
CAZyme: CBM32
CAZyme: CBM5
CAZyme: CBM50
CAZyme: CBM2
CAZyme: CBM12
Pathway: Glycolysis, core module involving three-carbon compounds
Pathway: PRPP biosynthesis, ribose 5P => PRPP
Pathway: Citrate cycle (TCA cycle, Krebs cycle)

GCF_000011005.1 (Pathway)
Pathway: Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
Metabolic module: M00010

GCF_000011005.1 (Pathway)
Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
Metabolic module: M00011

GCF_000011005.1 (Pathway)
Pathway: Threonine biosynthesis, aspartate => homoserine => threonine
Metabolic module: M00018

GCF_000011005.1 (Pathway)
Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Metabolic module: M00019

GCF_000011005.1 (Pathway)
Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
Metabolic module: M00024

GCF_000011005.1 (Pathway)
Pathway: Ornithine biosynthesis, glutamate => ornithine
Metabolic module: M00028

GCF_000011005.1 (Pathway)
Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP
Metabolic module: M00049

GCF_000011005.1 (Pathway)
Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP
Metabolic module: M00052

GCF_000011005.1 (Pathway)
Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Metabolic module: M00053

GCF_000011005.1 (Pathway)
Pathway: NAD biosynthesis, aspartate => quinolinate => NAD
Metabolic module: M00115

GCF_000011005.1 (Pathway)
Pathway: Coenzyme A biosynthesis, pantothenate => CoA
Metabolic module: M00120

GCF_000011005.1 (Pathway)
Pathway: Polyamine biosynthesis, arginine => ornithine => putrescine
Metabolic module: M00134

GCF_000011005.1 (Pathway)
Pathway: V/A-type ATPase, prokaryotes
Metabolic module: M00159

GCF_000011005.1 (Pathway)
Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA
Metabolic module: M00307

GCF_000011005.1 (Pathway)
Pathway: Formaldehyde assimilation, ribulose monophosphate pathway
Metabolic module: M00345

GCF_000011005.1 (Pathway)
Pathway: F420 biosynthesis, archaea
Metabolic module: M00378

GCF_000011005.1 (Pathway)
Pathway: Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine
Metabolic module: M00527

GCF_000011005.1 (Pathway)
Pathway: Pentose phosphate pathway, archaea, fructose 6P => ribose 5P
Metabolic module: M00580

GCF_000011005.1 (Pathway)
Pathway: Coenzyme F430 biosynthesis, sirohydrochlorin => coenzyme F430
Metabolic module: M00836

GCF_000011005.1 (Pathway)
Pathway: Arginine biosynthesis, ornithine => arginine
Metabolic module: M00844

GCF_000011005.1 (Pathway)
Pathway: Thiamine salvage pathway, HMP/HET => TMP
Metabolic module: M00899

GCF_000011005.1 (Pathway)
Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Metabolic module: M00916

GCF_000011005.1 (Pathway)
Pathway: Methanofuran biosynthesis
Metabolic module: M00935

GCF_000011005.1 (Pathway)
Pathway: UDP-ManNAcA biosynthesis, UDP-GlcNAc => UDP-ManNAcA
Metabolic module: M01014

GCF_000011005.1 (Pathway)
Pathway: GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc
Metabolic module: M01016

GCF_000011005.1 (Pathway)
Pathway: Pentose bisphosphate pathway (nucleoside degradation), archaea, nucleoside/NMP => 3-PGA/glycerone phosphate
Metabolic module: M00968

GCF_000011005.1 (Pathway)
Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor
Metabolic module: M00880

GCF_000011005.1 (Pathway)
Pathway: De novo purine biosynthesis, PRPP + glutamine => IMP
Metabolic module: M00048

GCF_000011005.1 (Pathway)
Pathway: Methanogenesis, CO2 => methane
Metabolic module: M00567

GCF_000011005.1 (Pathway)
Pathway: Alanine degradation II
Metabolic module: MF0034

GCF_000011005.1 (Pathway)
Pathway: Glutamine degradation II
Metabolic module: MF0047

GCF_000011005.1 (Pathway)
Pathway: Arginine degradation I
Metabolic module: MF0051

GCF_000011005.1 (Pathway)
Pathway: Pyruvate:ferredoxin oxidoreductase
Metabolic module: MF0073

GCF_000011005.1 (Pathway)
Pathway: Methanogenesis - methyl-coM
Metabolic module: MF0099

GCF_000011005.1 (Pathway)
Pathway: Methanogenesis from carbon dioxide
Metabolic module: MF0100

GCF_000011005.1 (Ecosystem)
Ecosystem: insect gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: mouse gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: human vaginal metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: freshwater metagenome
Prevalence (%): 1.7
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: coral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: pig gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: chicken gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: marine metagenome
Prevalence (%): 0.1
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: plant metagenome
Prevalence (%): 1.1
Relative abundance (%): 0.03

GCF_000011005.1 (Ecosystem)
Ecosystem: soil metagenome
Prevalence (%): 3.1
Relative abundance (%): 0.1

GCF_000011005.1 (Ecosystem)
Ecosystem: human oral metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: activated sludge metagenome
Prevalence (%): 0.1
Relative abundance (%): 0.01

GCF_000011005.1 (Ecosystem)
Ecosystem: wastewater metagenome
Prevalence (%): 0.3
Relative abundance (%): 1.33

GCF_000011005.1 (Ecosystem)
Ecosystem: rhizosphere metagenome
Prevalence (%): 1.5
Relative abundance (%): 0.1

GCF_000011005.1 (Ecosystem)
Ecosystem: marine sediment metagenome
Prevalence (%): 0.9
Relative abundance (%): 0.02

GCF_000011005.1 (Ecosystem)
Ecosystem: human lung metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: bovine gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: human skin metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (Ecosystem)
Ecosystem: human gut metagenome
Prevalence (%): 0
Relative abundance (%): 0

GCF_000011005.1 (MAGs)
MAGs: no MAG matches found