GCA_029237505.1 (Q203337): Difference between revisions
Appearance
Added qualifier: POCPu (P4): 2.5267249757045676 |
Created claim: MAGs (P28): no MAG matches found (Q42716) |
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| (168 intermediate revisions by the same user not shown) | |||||||
| Property / Comparison to close relatives: Saccharolobus shibatae / qualifier | |||||||
G+C Difference (%): 0.6799999999999997
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Acidilobus saccharovorans / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Acidilobus saccharovorans / qualifier | |||||||
16S Identity %: 23.549488054607508
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| Property / Comparison to close relatives: Acidilobus saccharovorans / qualifier | |||||||
POCPu: 2.0671834625323
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| Property / Comparison to close relatives: Acidilobus saccharovorans / qualifier | |||||||
G+C Difference (%): 21.18
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Desulfurococcus amylolyticus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Desulfurococcus amylolyticus / qualifier | |||||||
16S Identity %: 23.505154639175256
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| Property / Comparison to close relatives: Desulfurococcus amylolyticus / qualifier | |||||||
POCPu: 2.2004162949747252
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| Property / Comparison to close relatives: Desulfurococcus amylolyticus / qualifier | |||||||
G+C Difference (%): 9.119999999999997
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Sulfurisphaera ohwakuensis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Sulfurisphaera ohwakuensis / qualifier | |||||||
16S Identity %: 23.461012311901506
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| Property / Comparison to close relatives: Sulfurisphaera ohwakuensis / qualifier | |||||||
POCPu: 2.6064464783127734
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| Property / Comparison to close relatives: Sulfurisphaera ohwakuensis / qualifier | |||||||
G+C Difference (%): 3.289999999999999
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Sulfurisphaera tokodaii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Sulfurisphaera tokodaii / qualifier | |||||||
16S Identity %: 23.444976076555022
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| Property / Comparison to close relatives: Sulfurisphaera tokodaii / qualifier | |||||||
POCPu: 2.6880641925777335
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| Property / Comparison to close relatives: Sulfurisphaera tokodaii / qualifier | |||||||
G+C Difference (%): 3.25
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium paludis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium paludis / qualifier | |||||||
16S Identity %: 23.333333333333332
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| Property / Comparison to close relatives: Methanobacterium paludis / qualifier | |||||||
POCPu: 2.256826901376664
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| Property / Comparison to close relatives: Methanobacterium paludis / qualifier | |||||||
G+C Difference (%): 0.3100000000000023
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermogladius calderae / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermogladius calderae / qualifier | |||||||
16S Identity %: 22.866894197952217
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| Property / Comparison to close relatives: Thermogladius calderae / qualifier | |||||||
POCPu: 2.0582181711261396
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| Property / Comparison to close relatives: Thermogladius calderae / qualifier | |||||||
G+C Difference (%): 19.6
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Nitrososphaera viennensis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Nitrososphaera viennensis / qualifier | |||||||
16S Identity %: 22.82608695652174
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| Property / Comparison to close relatives: Nitrososphaera viennensis / qualifier | |||||||
POCPu: 37.1971971971972
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| Property / Comparison to close relatives: Nitrososphaera viennensis / qualifier | |||||||
G+C Difference (%): 16.68
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobrevibacter smithii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobrevibacter smithii / qualifier | |||||||
16S Identity %: 22.35054347826087
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| Property / Comparison to close relatives: Methanobrevibacter smithii / qualifier | |||||||
POCPu: 1.8882978723404256
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| Property / Comparison to close relatives: Methanobrevibacter smithii / qualifier | |||||||
G+C Difference (%): 5.009999999999998
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanotorris igneus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanotorris igneus / qualifier | |||||||
16S Identity %: 21.74505794137696
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| Property / Comparison to close relatives: Methanotorris igneus / qualifier | |||||||
POCPu: 2.6301946344029457
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| Property / Comparison to close relatives: Methanotorris igneus / qualifier | |||||||
G+C Difference (%): 3.740000000000002
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| Property / CAZyme | |||||||
| Property / CAZyme: GH0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH0 / qualifier | |||||||
Occurance: 4
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| Property / CAZyme | |||||||
| Property / CAZyme: GH101 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH101 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH13 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH13 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH88 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH88 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH19 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH19 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH130 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH130 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH105 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH105 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT66 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT66 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT22 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT22 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT1 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT1 / qualifier | |||||||
Occurance: 4
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| Property / CAZyme | |||||||
| Property / CAZyme: GT2 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT2 / qualifier | |||||||
Occurance: 13
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| Property / CAZyme | |||||||
| Property / CAZyme: GT4 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT4 / qualifier | |||||||
Occurance: 5
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| Property / CAZyme | |||||||
| Property / CAZyme: GT55 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT55 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: GT0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT0 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT81 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT81 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT20 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT20 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CE14 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CE14 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM50 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM50 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM32 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM32 / qualifier | |||||||
Occurance: 9
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM2 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM2 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM5 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM5 / qualifier | |||||||
Occurance: 1
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| Property / Pathway | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Threonine biosynthesis, aspartate => homoserine => threonine / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Threonine biosynthesis, aspartate => homoserine => threonine / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Lysine biosynthesis, mediated by LysW, 2-aminoadipate => lysine / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Lysine biosynthesis, mediated by LysW, 2-aminoadipate => lysine / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Adenine ribonucleotide biosynthesis, IMP => ADP, ATP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: NAD biosynthesis, aspartate => quinolinate => NAD / rank | |||||||
Normal rank | |||||||
| Property / Pathway: NAD biosynthesis, aspartate => quinolinate => NAD / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Coenzyme A biosynthesis, pantothenate => CoA / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Coenzyme A biosynthesis, pantothenate => CoA / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Arginine biosynthesis, ornithine => arginine / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Arginine biosynthesis, ornithine => arginine / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Arginine degradation I / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Arginine degradation I / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Acetate to acetyl-CoA / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Acetate to acetyl-CoA / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Propionate production II / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Propionate production II / qualifier | |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: insect gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Prevalence (%): 1.1
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| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Relative abundance (%): 0.03
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| Property / Ecosystem | |||||||
| Property / Ecosystem: mouse gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Prevalence (%): 0.1
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| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human vaginal metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Prevalence (%): 0.1
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| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: freshwater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Prevalence (%): 7.1
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| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Relative abundance (%): 0.02
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| Property / Ecosystem | |||||||
| Property / Ecosystem: coral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: coral metagenome / qualifier | |||||||
Prevalence (%): 0.2
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| Property / Ecosystem: coral metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: pig gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Prevalence (%): 1.3
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| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Relative abundance (%): 0.01
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| Property / Ecosystem | |||||||
| Property / Ecosystem: chicken gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Prevalence (%): 0.3
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| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Relative abundance (%): 0.07
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine metagenome / qualifier | |||||||
Prevalence (%): 1.3
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| Property / Ecosystem: marine metagenome / qualifier | |||||||
Relative abundance (%): 0.03
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| Property / Ecosystem | |||||||
| Property / Ecosystem: plant metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: plant metagenome / qualifier | |||||||
Prevalence (%): 15.9
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| Property / Ecosystem: plant metagenome / qualifier | |||||||
Relative abundance (%): 0.15
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| Property / Ecosystem | |||||||
| Property / Ecosystem: soil metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: soil metagenome / qualifier | |||||||
Prevalence (%): 32.4
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| Property / Ecosystem: soil metagenome / qualifier | |||||||
Relative abundance (%): 1.98
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human oral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Prevalence (%): 0.1
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| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Relative abundance (%): 0.06
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| Property / Ecosystem | |||||||
| Property / Ecosystem: activated sludge metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Prevalence (%): 3.3
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| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: wastewater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Prevalence (%): 4.8
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| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Relative abundance (%): 0.08
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| Property / Ecosystem | |||||||
| Property / Ecosystem: rhizosphere metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Prevalence (%): 55.9
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| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Relative abundance (%): 0.54
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine sediment metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Prevalence (%): 10.2
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| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Relative abundance (%): 0.25
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human lung metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Prevalence (%): 0.2
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| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Relative abundance (%): 0.03
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: bovine gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Prevalence (%): 0.9
| |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Relative abundance (%): 0.01
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: human skin metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Prevalence (%): 0.7
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| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Relative abundance (%): 5.92
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Prevalence (%): 0.2
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| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / MAGs | |||||||
| Property / MAGs: no MAG matches found / rank | |||||||
Normal rank | |||||||
Latest revision as of 12:20, 20 August 2026
genome assembly
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
||
| English | GCA_029237505.1 |
genome assembly |
Statements
no current description - please contribute here
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