GCA_018829185.1 (Q192432): Difference between revisions
Appearance
Added qualifier: 16S Identity % (P3): 74.08470926058865 |
Created claim: MAGs (P28): no MAG matches found (Q42716) |
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| (144 intermediate revisions by the same user not shown) | |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanocaldococcus indicus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanocaldococcus indicus / qualifier | |||||||
16S Identity %: 74.05017921146954
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium formicicum / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium formicicum / qualifier | |||||||
16S Identity %: 74.04692082111437
| |||||||
| Property / Comparison to close relatives: Methanobacterium formicicum / qualifier | |||||||
POCPu: 2.717229023589131
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| Property / Comparison to close relatives: Methanobacterium formicicum / qualifier | |||||||
G+C Difference (%): 10.749999999999996
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium kanagiense / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium kanagiense / qualifier | |||||||
16S Identity %: 74.01791867677464
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium aarhusense / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium aarhusense / qualifier | |||||||
16S Identity %: 73.88342165026495
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanotorris igneus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanotorris igneus / qualifier | |||||||
16S Identity %: 73.87140902872777
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| Property / Comparison to close relatives: Methanotorris igneus / qualifier | |||||||
POCPu: 3.443328550932568
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| Property / Comparison to close relatives: Methanotorris igneus / qualifier | |||||||
G+C Difference (%): 1.6799999999999962
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium ferruginis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium ferruginis / qualifier | |||||||
16S Identity %: 73.56733524355302
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| Property / Comparison to close relatives: Methanobacterium ferruginis / qualifier | |||||||
POCPu: 2.4890941750064153
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| Property / Comparison to close relatives: Methanobacterium ferruginis / qualifier | |||||||
G+C Difference (%): 6.77
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium movilense / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium movilense / qualifier | |||||||
16S Identity %: 73.52281226626776
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanococcoides burtonii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanococcoides burtonii / qualifier | |||||||
16S Identity %: 72.93233082706767
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| Property / Comparison to close relatives: Methanococcoides burtonii / qualifier | |||||||
POCPu: 2.513264451270595
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| Property / Comparison to close relatives: Methanococcoides burtonii / qualifier | |||||||
G+C Difference (%): 10.139999999999997
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanococcoides methylutens / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanococcoides methylutens / qualifier | |||||||
16S Identity %: 72.87087912087912
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| Property / Comparison to close relatives: Methanococcoides methylutens / qualifier | |||||||
POCPu: 2.627737226277372
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| Property / Comparison to close relatives: Methanococcoides methylutens / qualifier | |||||||
G+C Difference (%): 11.879999999999999
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanocaldococcus vulcanius / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanocaldococcus vulcanius / qualifier | |||||||
16S Identity %: 72.84299858557284
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| Property / Comparison to close relatives: Methanocaldococcus vulcanius / qualifier | |||||||
POCPu: 3.3736707004033737
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| Property / Comparison to close relatives: Methanocaldococcus vulcanius / qualifier | |||||||
G+C Difference (%): 0.9599999999999973
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanococcoides orientis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanococcoides orientis / qualifier | |||||||
16S Identity %: 72.74590163934425
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| Property / Comparison to close relatives: Methanococcoides orientis / qualifier | |||||||
POCPu: 2.6165413533834587
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| Property / Comparison to close relatives: Methanococcoides orientis / qualifier | |||||||
G+C Difference (%): 12.059999999999999
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanonatronarchaeum thermophilum / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanonatronarchaeum thermophilum / qualifier | |||||||
16S Identity %: 72.70861833105336
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| Property / Comparison to close relatives: Methanonatronarchaeum thermophilum / qualifier | |||||||
POCPu: 2.860596293311845
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| Property / Comparison to close relatives: Methanonatronarchaeum thermophilum / qualifier | |||||||
G+C Difference (%): 7.279999999999998
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanohalophilus mahii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanohalophilus mahii / qualifier | |||||||
16S Identity %: 72.6775956284153
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| Property / Comparison to close relatives: Methanohalophilus mahii / qualifier | |||||||
POCPu: 2.317769566677864
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| Property / Comparison to close relatives: Methanohalophilus mahii / qualifier | |||||||
G+C Difference (%): 11.999999999999996
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothrix soehngenii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothrix soehngenii / qualifier | |||||||
16S Identity %: 72.67123287671234
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| Property / Comparison to close relatives: Methanothrix soehngenii / qualifier | |||||||
POCPu: 2.0677628300946687
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| Property / Comparison to close relatives: Methanothrix soehngenii / qualifier | |||||||
G+C Difference (%): 20.37
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanohalophilus halophilus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanohalophilus halophilus / qualifier | |||||||
16S Identity %: 72.47769389155799
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| Property / Comparison to close relatives: Methanohalophilus halophilus / qualifier | |||||||
POCPu: 2.430093209054594
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| Property / Comparison to close relatives: Methanohalophilus halophilus / qualifier | |||||||
G+C Difference (%): 11.779999999999998
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| Property / Carbon source | |||||||
| Property / Carbon source: cellulose / rank | |||||||
Normal rank | |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GH105 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH105 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH28 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH28 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH10 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH10 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH130 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH130 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH5 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH5 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT66 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT66 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT13 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT13 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT4 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT4 / qualifier | |||||||
Occurance: 4
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| Property / CAZyme | |||||||
| Property / CAZyme: GT2 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT2 / qualifier | |||||||
Occurance: 9
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| Property / CAZyme | |||||||
| Property / CAZyme: GT26 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT26 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT9 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT9 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM50 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM50 / qualifier | |||||||
Occurance: 2
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| Property / Pathway | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Acylglycerol degradation / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Acylglycerol degradation / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Pyruvate:ferredoxin oxidoreductase / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Pyruvate:ferredoxin oxidoreductase / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Acetyl-CoA to acetate / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Acetyl-CoA to acetate / qualifier | |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: insect gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: mouse gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human vaginal metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: freshwater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: coral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: coral metagenome / qualifier | |||||||
Prevalence (%): 0.1
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| Property / Ecosystem: coral metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: pig gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: chicken gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine metagenome / qualifier | |||||||
Prevalence (%): 0.3
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| Property / Ecosystem: marine metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: plant metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: plant metagenome / qualifier | |||||||
Prevalence (%): 0.1
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| Property / Ecosystem: plant metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: soil metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: soil metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: soil metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human oral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: activated sludge metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: wastewater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: rhizosphere metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine sediment metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Prevalence (%): 1.7
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| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human lung metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: bovine gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human skin metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / MAGs | |||||||
| Property / MAGs: no MAG matches found / rank | |||||||
Normal rank | |||||||
Latest revision as of 18:44, 19 August 2026
genome assembly
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
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| English | GCA_018829185.1 |
genome assembly |
Statements
no current description - please contribute here
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