GCA_035299465.1 (Q188192): Difference between revisions
Appearance
Added qualifier: 16S Identity % (P3): 72.59615384615384 |
Created claim: MAGs (P28): no MAG matches found (Q42716) |
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| Property / Comparison to close relatives: Methanosphaerula palustris / qualifier | |||||||
POCPu: 1.6687116564417177
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| Property / Comparison to close relatives: Methanosphaerula palustris / qualifier | |||||||
G+C Difference (%): 12
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanococcus vannielii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanococcus vannielii / qualifier | |||||||
16S Identity %: 72.56515775034293
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| Property / Comparison to close relatives: Methanococcus vannielii / qualifier | |||||||
POCPu: 2.1367521367521367
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| Property / Comparison to close relatives: Methanococcus vannielii / qualifier | |||||||
G+C Difference (%): 12.020000000000003
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium petrolearium / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium petrolearium / qualifier | |||||||
16S Identity %: 72.45119305856834
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| Property / Comparison to close relatives: Methanobacterium petrolearium / qualifier | |||||||
POCPu: 1.5076754385964912
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| Property / Comparison to close relatives: Methanobacterium petrolearium / qualifier | |||||||
G+C Difference (%): 5.579999999999998
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium oryzae / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium oryzae / qualifier | |||||||
16S Identity %: 72.44258872651356
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanolinea tarda / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanolinea tarda / qualifier | |||||||
16S Identity %: 72.23001402524544
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| Property / Comparison to close relatives: Methanolinea tarda / qualifier | |||||||
POCPu: 1.8506278916060808
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| Property / Comparison to close relatives: Methanolinea tarda / qualifier | |||||||
G+C Difference (%): 11.479999999999997
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanoregula formicica / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanoregula formicica / qualifier | |||||||
16S Identity %: 72.19827586206897
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| Property / Comparison to close relatives: Methanoregula formicica / qualifier | |||||||
POCPu: 1.3649425287356323
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| Property / Comparison to close relatives: Methanoregula formicica / qualifier | |||||||
G+C Difference (%): 11.850000000000001
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobrevibacter wolinii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobrevibacter wolinii / qualifier | |||||||
16S Identity %: 72.14443625644805
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| Property / Comparison to close relatives: Methanobrevibacter wolinii / qualifier | |||||||
POCPu: 1.609118337244385
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| Property / Comparison to close relatives: Methanobrevibacter wolinii / qualifier | |||||||
G+C Difference (%): 19.18
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium ferruginis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium ferruginis / qualifier | |||||||
16S Identity %: 72.12294496068621
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| Property / Comparison to close relatives: Methanobacterium ferruginis / qualifier | |||||||
POCPu: 1.6796782588123966
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| Property / Comparison to close relatives: Methanobacterium ferruginis / qualifier | |||||||
G+C Difference (%): 5.960000000000001
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanococcus voltae / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanococcus voltae / qualifier | |||||||
16S Identity %: 70.76183939601923
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| Property / Comparison to close relatives: Methanococcus voltae / qualifier | |||||||
POCPu: 1.8919848641210868
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| Property / Comparison to close relatives: Methanococcus voltae / qualifier | |||||||
G+C Difference (%): 14.360000000000003
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermobacter wolfeii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermobacter wolfeii / qualifier | |||||||
POCPu: 2.1642266072565244
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| Property / Comparison to close relatives: Methanothermobacter wolfeii / qualifier | |||||||
G+C Difference (%): 5.32
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| Property / Carbon source | |||||||
| Property / Carbon source: starch / rank | |||||||
Normal rank | |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GH57 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH57 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH1 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH1 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH0 / qualifier | |||||||
Occurance: 3
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| Property / CAZyme | |||||||
| Property / CAZyme: GT13 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT13 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT66 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT66 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT3 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT3 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT2 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT2 / qualifier | |||||||
Occurance: 8
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| Property / CAZyme | |||||||
| Property / CAZyme: GT35 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT35 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT4 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT4 / qualifier | |||||||
Occurance: 7
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| Property / CAZyme | |||||||
| Property / CAZyme: GT1 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT1 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CE14 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CE14 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM50 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM50 / qualifier | |||||||
Occurance: 4
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM13 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM13 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM48 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM48 / qualifier | |||||||
Occurance: 1
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| Property / Pathway | |||||||
| Property / Pathway: Glycolysis, core module involving three-carbon compounds / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Glycolysis, core module involving three-carbon compounds / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Acylglycerol degradation / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Acylglycerol degradation / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Catechol meta-cleavage, catechol => acetyl-CoA / 4-methylcatechol => propanoyl-CoA / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA / rank | |||||||
Normal rank | |||||||
| Property / Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man / rank | |||||||
Normal rank | |||||||
| Property / Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Mannose degradation / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Mannose degradation / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Glycolysis (pay-off phase) / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Glycolysis (pay-off phase) / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Acetyl-CoA to acetate / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Acetyl-CoA to acetate / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Lactate production / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Lactate production / qualifier | |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: insect gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: mouse gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human vaginal metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: freshwater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Prevalence (%): 1.1
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| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Relative abundance (%): 0.01
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| Property / Ecosystem | |||||||
| Property / Ecosystem: coral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: coral metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: coral metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: pig gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: chicken gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: marine metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: plant metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: plant metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: plant metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: soil metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: soil metagenome / qualifier | |||||||
Prevalence (%): 0.2
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| Property / Ecosystem: soil metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human oral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: activated sludge metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: wastewater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Prevalence (%): 0.1
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| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Relative abundance (%): 0.01
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| Property / Ecosystem | |||||||
| Property / Ecosystem: rhizosphere metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine sediment metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human lung metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: bovine gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human skin metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / MAGs | |||||||
| Property / MAGs: no MAG matches found / rank | |||||||
Normal rank | |||||||
Latest revision as of 12:53, 19 August 2026
genome assembly
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
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| English | GCA_035299465.1 |
genome assembly |
Statements
no current description - please contribute here
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