GCA_027858315.1 (Q182240): Difference between revisions
Appearance
Added qualifier: POCPu (P4): 1.0976948408342482 |
Created claim: MAGs (P28): no MAG matches found (Q42716) |
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| (170 intermediate revisions by the same user not shown) | |||||||
| Property / Comparison to close relatives: Methanosphaera cuniculi / qualifier | |||||||
G+C Difference (%): 0.509999999999998
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermococcus okinawensis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermococcus okinawensis / qualifier | |||||||
16S Identity %: 25.08638562543193
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| Property / Comparison to close relatives: Methanothermococcus okinawensis / qualifier | |||||||
POCPu: 1.4232008592910848
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| Property / Comparison to close relatives: Methanothermococcus okinawensis / qualifier | |||||||
G+C Difference (%): 1.7100000000000009
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermoplasma volcanium / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermoplasma volcanium / qualifier | |||||||
16S Identity %: 24.706694271911665
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| Property / Comparison to close relatives: Thermoplasma volcanium / qualifier | |||||||
POCPu: 0.7303218826075196
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| Property / Comparison to close relatives: Thermoplasma volcanium / qualifier | |||||||
G+C Difference (%): 12.350000000000001
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium ivanovii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium ivanovii / qualifier | |||||||
16S Identity %: 24.623115577889447
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium subterraneum / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium subterraneum / qualifier | |||||||
16S Identity %: 24.609929078014183
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| Property / Comparison to close relatives: Methanobacterium subterraneum / qualifier | |||||||
POCPu: 0.9784300644874362
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| Property / Comparison to close relatives: Methanobacterium subterraneum / qualifier | |||||||
G+C Difference (%): 11.829999999999998
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobrevibacter woesei / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobrevibacter woesei / qualifier | |||||||
16S Identity %: 24.6001523229246
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| Property / Comparison to close relatives: Methanobrevibacter woesei / qualifier | |||||||
POCPu: 1.1535292502059873
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| Property / Comparison to close relatives: Methanobrevibacter woesei / qualifier | |||||||
G+C Difference (%): 2.3299999999999983
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermobacter marburgensis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermobacter marburgensis / qualifier | |||||||
16S Identity %: 24.43064182194617
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| Property / Comparison to close relatives: Methanothermobacter marburgensis / qualifier | |||||||
POCPu: 1.155765694772787
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| Property / Comparison to close relatives: Methanothermobacter marburgensis / qualifier | |||||||
G+C Difference (%): 21.07
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanotorris igneus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanotorris igneus / qualifier | |||||||
16S Identity %: 24.3616287094548
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| Property / Comparison to close relatives: Methanotorris igneus / qualifier | |||||||
POCPu: 1.6232929657304818
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| Property / Comparison to close relatives: Methanotorris igneus / qualifier | |||||||
G+C Difference (%): 4.729999999999997
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobrevibacter boviskoreani / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobrevibacter boviskoreani / qualifier | |||||||
16S Identity %: 24.31156569630212
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| Property / Comparison to close relatives: Methanobrevibacter boviskoreani / qualifier | |||||||
POCPu: 1.0800842992623814
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| Property / Comparison to close relatives: Methanobrevibacter boviskoreani / qualifier | |||||||
G+C Difference (%): 1.4100000000000001
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanotorris formicicus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanotorris formicicus / qualifier | |||||||
16S Identity %: 24.30939226519337
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| Property / Comparison to close relatives: Methanotorris formicicus / qualifier | |||||||
POCPu: 1.443145060960438
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| Property / Comparison to close relatives: Methanotorris formicicus / qualifier | |||||||
G+C Difference (%): 4.869999999999997
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanosphaera stadtmanae / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanosphaera stadtmanae / qualifier | |||||||
16S Identity %: 24.30939226519337
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| Property / Comparison to close relatives: Methanosphaera stadtmanae / qualifier | |||||||
POCPu: 1.2184990307394072
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| Property / Comparison to close relatives: Methanosphaera stadtmanae / qualifier | |||||||
G+C Difference (%): 0.05999999999999872
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium formicicum / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium formicicum / qualifier | |||||||
16S Identity %: 24.224519940915805
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| Property / Comparison to close relatives: Methanobacterium formicicum / qualifier | |||||||
POCPu: 1.1031067086897792
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| Property / Comparison to close relatives: Methanobacterium formicicum / qualifier | |||||||
G+C Difference (%): 13.799999999999997
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermobacter wolfei / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermobacter wolfei / qualifier | |||||||
16S Identity %: 24.115983026874115
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium palustre / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium palustre / qualifier | |||||||
16S Identity %: 24.112961622013035
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermoplasma acidophilum / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermoplasma acidophilum / qualifier | |||||||
16S Identity %: 23.964088397790057
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| Property / Comparison to close relatives: Thermoplasma acidophilum / qualifier | |||||||
POCPu: 0.6888950124001102
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| Property / Comparison to close relatives: Thermoplasma acidophilum / qualifier | |||||||
G+C Difference (%): 18.42
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Halorarius litoreus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Halorarius litoreus / qualifier | |||||||
16S Identity %: 23.83599722029187
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| Property / Comparison to close relatives: Halorarius litoreus / qualifier | |||||||
POCPu: 0.4369538077403246
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| Property / Comparison to close relatives: Halorarius litoreus / qualifier | |||||||
G+C Difference (%): 38.99999999999999
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium veterum / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium veterum / qualifier | |||||||
16S Identity %: 23.83107088989442
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| Property / Comparison to close relatives: Methanobacterium veterum / qualifier | |||||||
POCPu: 1.030155459823937
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| Property / Comparison to close relatives: Methanobacterium veterum / qualifier | |||||||
G+C Difference (%): 5.600000000000001
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobrevibacter acididurans / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobrevibacter acididurans / qualifier | |||||||
16S Identity %: 23.569277108433734
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium alkalithermotolerans / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium alkalithermotolerans / qualifier | |||||||
16S Identity %: 22.780569514237854
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| Property / Comparison to close relatives: Methanobacterium alkalithermotolerans / qualifier | |||||||
POCPu: 1.3045540796963948
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| Property / Comparison to close relatives: Methanobacterium alkalithermotolerans / qualifier | |||||||
G+C Difference (%): 8.780000000000001
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium paludis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium paludis / qualifier | |||||||
16S Identity %: 22.498274672187716
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| Property / Comparison to close relatives: Methanobacterium paludis / qualifier | |||||||
POCPu: 1.2416851441241685
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| Property / Comparison to close relatives: Methanobacterium paludis / qualifier | |||||||
G+C Difference (%): 8.159999999999997
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermobacter wolfeii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermobacter wolfeii / qualifier | |||||||
POCPu: 1.2804097311139564
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| Property / Comparison to close relatives: Methanothermobacter wolfeii / qualifier | |||||||
G+C Difference (%): 21.1
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| Property / Carbon source | |||||||
| Property / Carbon source: starch / rank | |||||||
Normal rank | |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GH13 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH13 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: GH28 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH28 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH23 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH23 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH57 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH57 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: GH0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH0 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT66 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT66 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT35 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT35 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT3 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT3 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT2 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT2 / qualifier | |||||||
Occurance: 9
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| Property / CAZyme | |||||||
| Property / CAZyme: GT4 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT4 / qualifier | |||||||
Occurance: 7
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| Property / CAZyme | |||||||
| Property / CAZyme: GT61 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT61 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT0 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: PL1 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: PL1 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM50 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM50 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM48 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM48 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM20 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM20 / qualifier | |||||||
Occurance: 1
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| Property / Pathway | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc / rank | |||||||
Normal rank | |||||||
| Property / Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA / rank | |||||||
Normal rank | |||||||
| Property / Pathway: UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA / qualifier | |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: insect gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: mouse gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human vaginal metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: freshwater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: coral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: coral metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: coral metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: pig gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: chicken gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine metagenome / qualifier | |||||||
Prevalence (%): 0.1
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| Property / Ecosystem: marine metagenome / qualifier | |||||||
Relative abundance (%): 0.02
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| Property / Ecosystem | |||||||
| Property / Ecosystem: plant metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: plant metagenome / qualifier | |||||||
Prevalence (%): 0.4
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| Property / Ecosystem: plant metagenome / qualifier | |||||||
Relative abundance (%): 0.01
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| Property / Ecosystem | |||||||
| Property / Ecosystem: soil metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: soil metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: soil metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human oral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: activated sludge metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: wastewater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: rhizosphere metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: marine sediment metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Prevalence (%): 0.1
| |||||||
| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: human lung metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: bovine gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: human skin metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: human gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / MAGs | |||||||
| Property / MAGs: no MAG matches found / rank | |||||||
Normal rank | |||||||
Latest revision as of 04:25, 19 August 2026
genome assembly
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
||
| English | GCA_027858315.1 |
genome assembly |
Statements
no current description - please contribute here
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