GCA_041484255.1 (Q133396): Difference between revisions
Appearance
Added qualifier: 16S Identity % (P3): 23.461012311901506 |
Created claim: MAGs (P28): no MAG matches found (Q42716) |
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| (187 intermediate revisions by the same user not shown) | |||||||
| Property / Comparison to close relatives: Methanocaldococcus jannaschii / qualifier | |||||||
POCPu: 2.9644268774703555
| |||||||
| Property / Comparison to close relatives: Methanocaldococcus jannaschii / qualifier | |||||||
G+C Difference (%): 25.83
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanocaldococcus bathoardescens / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanocaldococcus bathoardescens / qualifier | |||||||
16S Identity %: 23.392612859097127
| |||||||
| Property / Comparison to close relatives: Methanocaldococcus bathoardescens / qualifier | |||||||
POCPu: 3.0335097001763667
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| Property / Comparison to close relatives: Methanocaldococcus bathoardescens / qualifier | |||||||
G+C Difference (%): 26.33
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus stetteri / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus stetteri / qualifier | |||||||
16S Identity %: 23.380281690140844
| |||||||
| Property / Comparison to close relatives: Thermococcus stetteri / qualifier | |||||||
POCPu: 2.703488372093023
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| Property / Comparison to close relatives: Thermococcus stetteri / qualifier | |||||||
G+C Difference (%): 4.649999999999999
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus nautili / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus nautili / qualifier | |||||||
16S Identity %: 23.342736248236953
| |||||||
| Property / Comparison to close relatives: Thermococcus nautili / qualifier | |||||||
POCPu: 2.844311377245509
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| Property / Comparison to close relatives: Thermococcus nautili / qualifier | |||||||
G+C Difference (%): 2.279999999999994
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus camini / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus camini / qualifier | |||||||
16S Identity %: 23.308270676691727
| |||||||
| Property / Comparison to close relatives: Thermococcus camini / qualifier | |||||||
POCPu: 2.460984393757503
| |||||||
| Property / Comparison to close relatives: Thermococcus camini / qualifier | |||||||
G+C Difference (%): 2.489999999999995
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus guaymasensis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus guaymasensis / qualifier | |||||||
16S Identity %: 23.2722143864598
| |||||||
| Property / Comparison to close relatives: Thermococcus guaymasensis / qualifier | |||||||
POCPu: 2.849264705882353
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| Property / Comparison to close relatives: Thermococcus guaymasensis / qualifier | |||||||
G+C Difference (%): 4.259999999999998
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Palaeococcus helgesonii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Palaeococcus helgesonii / qualifier | |||||||
16S Identity %: 23.265592151366505
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium flexile / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium flexile / qualifier | |||||||
16S Identity %: 23.249299719887954
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus cleftensis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus cleftensis / qualifier | |||||||
16S Identity %: 23.239917976760083
| |||||||
| Property / Comparison to close relatives: Thermococcus cleftensis / qualifier | |||||||
POCPu: 2.845654191153727
| |||||||
| Property / Comparison to close relatives: Thermococcus cleftensis / qualifier | |||||||
G+C Difference (%): 1.2999999999999972
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus peptonophilus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus peptonophilus / qualifier | |||||||
16S Identity %: 23.20675105485232
| |||||||
| Property / Comparison to close relatives: Thermococcus peptonophilus / qualifier | |||||||
POCPu: 2.735467827168169
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| Property / Comparison to close relatives: Thermococcus peptonophilus / qualifier | |||||||
G+C Difference (%): 5.3799999999999955
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus celericrescens / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus celericrescens / qualifier | |||||||
16S Identity %: 23.171565276828435
| |||||||
| Property / Comparison to close relatives: Thermococcus celericrescens / qualifier | |||||||
POCPu: 2.2353891731753297
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| Property / Comparison to close relatives: Thermococcus celericrescens / qualifier | |||||||
G+C Difference (%): 2.8299999999999983
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermococcus okinawensis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermococcus okinawensis / qualifier | |||||||
16S Identity %: 23.06639288158795
| |||||||
| Property / Comparison to close relatives: Methanothermococcus okinawensis / qualifier | |||||||
POCPu: 3.080736543909348
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| Property / Comparison to close relatives: Methanothermococcus okinawensis / qualifier | |||||||
G+C Difference (%): 27.839999999999996
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus atlanticus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus atlanticus / qualifier | |||||||
16S Identity %: 23.060344827586206
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus gammatolerans / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus gammatolerans / qualifier | |||||||
16S Identity %: 23.034859876965143
| |||||||
| Property / Comparison to close relatives: Thermococcus gammatolerans / qualifier | |||||||
POCPu: 2.7902790279027903
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| Property / Comparison to close relatives: Thermococcus gammatolerans / qualifier | |||||||
G+C Difference (%): 3.559999999999995
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermoplasma acidophilum / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermoplasma acidophilum / qualifier | |||||||
16S Identity %: 23.013698630136986
| |||||||
| Property / Comparison to close relatives: Thermoplasma acidophilum / qualifier | |||||||
POCPu: 1.392451447416636
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| Property / Comparison to close relatives: Thermoplasma acidophilum / qualifier | |||||||
G+C Difference (%): 11.129999999999995
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanococcus aeolicus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanococcus aeolicus / qualifier | |||||||
16S Identity %: 22.99794661190965
| |||||||
| Property / Comparison to close relatives: Methanococcus aeolicus / qualifier | |||||||
POCPu: 2.682563338301043
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| Property / Comparison to close relatives: Methanococcus aeolicus / qualifier | |||||||
G+C Difference (%): 27.08
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanotorris formicicus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanotorris formicicus / qualifier | |||||||
16S Identity %: 22.99794661190965
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| Property / Comparison to close relatives: Methanotorris formicicus / qualifier | |||||||
POCPu: 2.72523244629689
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| Property / Comparison to close relatives: Methanotorris formicicus / qualifier | |||||||
G+C Difference (%): 24.68
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium beijingense / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium beijingense / qualifier | |||||||
16S Identity %: 22.743425728500355
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanofervidicoccus abyssi / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanofervidicoccus abyssi / qualifier | |||||||
16S Identity %: 22.693096377306905
| |||||||
| Property / Comparison to close relatives: Methanofervidicoccus abyssi / qualifier | |||||||
POCPu: 3.145695364238411
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| Property / Comparison to close relatives: Methanofervidicoccus abyssi / qualifier | |||||||
G+C Difference (%): 21.869999999999997
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermoplasma volcanium / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermoplasma volcanium / qualifier | |||||||
16S Identity %: 22.67123287671233
| |||||||
| Property / Comparison to close relatives: Thermoplasma volcanium / qualifier | |||||||
POCPu: 1.537361458705756
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| Property / Comparison to close relatives: Thermoplasma volcanium / qualifier | |||||||
G+C Difference (%): 17.199999999999996
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus henrietii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus henrietii / qualifier | |||||||
16S Identity %: 22.48803827751196
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| Property / Comparison to close relatives: Thermococcus henrietii / qualifier | |||||||
POCPu: 2.6338391067849987
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| Property / Comparison to close relatives: Thermococcus henrietii / qualifier | |||||||
G+C Difference (%): 2.539999999999999
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus acidaminovorans / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus acidaminovorans / qualifier | |||||||
16S Identity %: 22.428571428571427
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus kodakarensis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus kodakarensis / qualifier | |||||||
16S Identity %: 22.146274777853726
| |||||||
| Property / Comparison to close relatives: Thermococcus kodakarensis / qualifier | |||||||
POCPu: 2.6785714285714284
| |||||||
| Property / Comparison to close relatives: Thermococcus kodakarensis / qualifier | |||||||
G+C Difference (%): 5.119999999999997
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus coalescens / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus coalescens / qualifier | |||||||
16S Identity %: 21.941216678058783
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Thermococcus prieurii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Thermococcus prieurii / qualifier | |||||||
16S Identity %: 21.80616740088106
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GH28 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH28 / qualifier | |||||||
Occurance: 1
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GH57 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH57 / qualifier | |||||||
Occurance: 1
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GH0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH0 / qualifier | |||||||
Occurance: 3
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GH16 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH16 / qualifier | |||||||
Occurance: 1
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GH135 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH135 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT13 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT13 / qualifier | |||||||
Occurance: 2
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GT66 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT66 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT3 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT3 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT0 / qualifier | |||||||
Occurance: 2
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GT2 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT2 / qualifier | |||||||
Occurance: 15
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GT4 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT4 / qualifier | |||||||
Occurance: 6
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GT39 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT39 / qualifier | |||||||
Occurance: 1
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GT9 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT9 / qualifier | |||||||
Occurance: 2
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GT1 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT1 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CE14 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CE14 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM50 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM50 / qualifier | |||||||
Occurance: 2
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| Property / Pathway | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Triacylglycerol biosynthesis / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Triacylglycerol biosynthesis / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Phosphatidylcholine (PC) biosynthesis, PE => PC / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Phosphatidylcholine (PC) biosynthesis, PE => PC / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man / rank | |||||||
Normal rank | |||||||
| Property / Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Mannose degradation / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Mannose degradation / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Lactate production / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Lactate production / qualifier | |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: insect gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: mouse gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human vaginal metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: freshwater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Prevalence (%): 5.3
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| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Relative abundance (%): 0.01
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| Property / Ecosystem | |||||||
| Property / Ecosystem: coral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: coral metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: coral metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: pig gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: chicken gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: marine metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine metagenome / qualifier | |||||||
Prevalence (%): 0.2
| |||||||
| Property / Ecosystem: marine metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: plant metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: plant metagenome / qualifier | |||||||
Prevalence (%): 0.1
| |||||||
| Property / Ecosystem: plant metagenome / qualifier | |||||||
Relative abundance (%): 0.01
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: soil metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: soil metagenome / qualifier | |||||||
Prevalence (%): 0.5
| |||||||
| Property / Ecosystem: soil metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: human oral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: activated sludge metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: wastewater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: rhizosphere metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: marine sediment metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Prevalence (%): 7
| |||||||
| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Relative abundance (%): 0.01
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: human lung metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: bovine gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: human skin metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: human gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / MAGs | |||||||
| Property / MAGs: no MAG matches found / rank | |||||||
Normal rank | |||||||
Latest revision as of 07:58, 15 August 2026
genome assembly
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
||
| English | GCA_041484255.1 |
genome assembly |
Statements
no current description - please contribute here
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