GCA_030266405.1 (Q102412): Difference between revisions
Appearance
Added qualifier: 16S Identity % (P3): 90.21739130434783 |
Created claim: MAGs (P28): no MAG matches found (Q42716) |
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| (146 intermediate revisions by the same user not shown) | |||||||
| Property / Comparison to close relatives: Methanosphaera stadtmanae / qualifier | |||||||
POCPu: 34.27730783376241
| |||||||
| Property / Comparison to close relatives: Methanosphaera stadtmanae / qualifier | |||||||
G+C Difference (%): 0.379999999999999
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanosphaera cuniculi / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanosphaera cuniculi / qualifier | |||||||
16S Identity %: 89.8845892735913
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| Property / Comparison to close relatives: Methanosphaera cuniculi / qualifier | |||||||
POCPu: 29.941860465116278
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| Property / Comparison to close relatives: Methanosphaera cuniculi / qualifier | |||||||
G+C Difference (%): 0.8299999999999983
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermobacter tenebrarum / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermobacter tenebrarum / qualifier | |||||||
16S Identity %: 89.7508896797153
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| Property / Comparison to close relatives: Methanothermobacter tenebrarum / qualifier | |||||||
POCPu: 41.699533883112224
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| Property / Comparison to close relatives: Methanothermobacter tenebrarum / qualifier | |||||||
G+C Difference (%): 14.799999999999997
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermobacter crinale / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermobacter crinale / qualifier | |||||||
16S Identity %: 89.32038834951457
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium thermaggregans / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium thermaggregans / qualifier | |||||||
16S Identity %: 88.39662447257383
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermus fervidus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermus fervidus / qualifier | |||||||
16S Identity %: 84.85054347826086
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| Property / Comparison to close relatives: Methanothermus fervidus / qualifier | |||||||
POCPu: 38.309859154929576
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| Property / Comparison to close relatives: Methanothermus fervidus / qualifier | |||||||
G+C Difference (%): 4.390000000000001
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermus sociabilis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermus sociabilis / qualifier | |||||||
16S Identity %: 84.57337883959045
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanothermobacter wolfeii / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanothermobacter wolfeii / qualifier | |||||||
POCPu: 37.9356123464985
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| Property / Comparison to close relatives: Methanothermobacter wolfeii / qualifier | |||||||
G+C Difference (%): 21.42
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| Property / CAZyme | |||||||
| Property / CAZyme: GH154 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH154 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH73 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH73 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH0 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: GH33 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH33 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT13 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT13 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: GT66 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT66 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT1 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT1 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT2 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT2 / qualifier | |||||||
Occurance: 25
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| Property / CAZyme | |||||||
| Property / CAZyme: GT4 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT4 / qualifier | |||||||
Occurance: 12
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| Property / CAZyme | |||||||
| Property / CAZyme: GT81 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT81 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT0 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT28 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT28 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT97 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT97 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT8 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT8 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CE9 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CE9 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM50 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM50 / qualifier | |||||||
Occurance: 5
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM48 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM48 / qualifier | |||||||
Occurance: 1
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| Property / Pathway | |||||||
| Property / Pathway: Citrate cycle (TCA cycle, Krebs cycle) / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Citrate cycle (TCA cycle, Krebs cycle) / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Ornithine biosynthesis, glutamate => ornithine / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Ornithine biosynthesis, glutamate => ornithine / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: NAD biosynthesis, aspartate => quinolinate => NAD / rank | |||||||
Normal rank | |||||||
| Property / Pathway: NAD biosynthesis, aspartate => quinolinate => NAD / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Pentose phosphate pathway, archaea, fructose 6P => ribose 5P / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Pentose phosphate pathway, archaea, fructose 6P => ribose 5P / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha / rank | |||||||
Normal rank | |||||||
| Property / Pathway: dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf / rank | |||||||
Normal rank | |||||||
| Property / Pathway: UDP-Galf biosynthesis, UDP-Glc => UDP-Galf / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Tryptophan biosynthesis, chorismate => tryptophan / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Tryptophan biosynthesis, chorismate => tryptophan / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Methanogenesis, CO2 => methane / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Methanogenesis, CO2 => methane / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Glutamate degradation II / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Glutamate degradation II / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Arginine degradation I / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Arginine degradation I / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Pyruvate:ferredoxin oxidoreductase / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Pyruvate:ferredoxin oxidoreductase / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Methanogenesis - methyl-coM / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Methanogenesis - methyl-coM / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Methanogenesis from carbon dioxide / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Methanogenesis from carbon dioxide / qualifier | |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: insect gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Prevalence (%): 0.1
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| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Relative abundance (%): 0.04
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| Property / Ecosystem | |||||||
| Property / Ecosystem: mouse gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human vaginal metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: freshwater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Prevalence (%): 0.5
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| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Relative abundance (%): 0.04
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| Property / Ecosystem | |||||||
| Property / Ecosystem: coral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: coral metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: coral metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: pig gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: chicken gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine metagenome / qualifier | |||||||
Prevalence (%): 0.1
| |||||||
| Property / Ecosystem: marine metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: plant metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: plant metagenome / qualifier | |||||||
Prevalence (%): 0.1
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| Property / Ecosystem: plant metagenome / qualifier | |||||||
Relative abundance (%): 0.05
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| Property / Ecosystem | |||||||
| Property / Ecosystem: soil metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: soil metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: soil metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human oral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: activated sludge metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Prevalence (%): 1
| |||||||
| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: wastewater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Prevalence (%): 0.1
| |||||||
| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: rhizosphere metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine sediment metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Prevalence (%): 0.2
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| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Relative abundance (%): 0.01
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human lung metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: bovine gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Prevalence (%): 0.3
| |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Relative abundance (%): 0.01
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human skin metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / MAGs | |||||||
| Property / MAGs: no MAG matches found / rank | |||||||
Normal rank | |||||||
Latest revision as of 20:01, 12 August 2026
genome assembly
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
||
| English | GCA_030266405.1 |
genome assembly |
Statements
no current description - please contribute here
0 references
95.6551255940258
57.82151340346115
78.4797
3.780000000000001
0 references
95.55555555555556
52.873194221508825
77.3287
1.8099999999999987
0 references
95.04876219054765
62.89559839941797
79.1354
2.6499999999999986
0 references
94.97334348819497
48.948019801980195
77.3283
0.46000000000000085
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94.60745440126882
51.70781197159283
77.504
0.4499999999999993
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94.48123620309052
45.26919401083148
76.7989
1.5300000000000011
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93.82352941176471
47.50402576489533
77.0498
0.26000000000000156
0 references
93.80196523053665
54.201262039189636
78.0104
2.7699999999999996
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93.46970889063729
52.96143250688705
77.3525
1.7300000000000004
0 references
93.46549192364171
53.153468815697266
77.3738
3.0799999999999983
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