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‎Added qualifier: Relative abundance (%) (P19): 0.08
 
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Property / Ecosystem
 
Property / Ecosystem: pig gut metagenome / rank
 
Normal rank
Property / Ecosystem: pig gut metagenome / qualifier
 
Prevalence (%): 18.8
Amount18.8
Unit1
Property / Ecosystem: pig gut metagenome / qualifier
 
Relative abundance (%): 0.01
Amount0.01
Unit1
Property / Ecosystem
 
Property / Ecosystem: chicken gut metagenome / rank
 
Normal rank
Property / Ecosystem: chicken gut metagenome / qualifier
 
Prevalence (%): 4.4
Amount4.4
Unit1
Property / Ecosystem: chicken gut metagenome / qualifier
 
Relative abundance (%): 1.91
Amount1.91
Unit1
Property / Ecosystem
 
Property / Ecosystem: marine metagenome / rank
 
Normal rank
Property / Ecosystem: marine metagenome / qualifier
 
Prevalence (%): 3
Amount3
Unit1
Property / Ecosystem: marine metagenome / qualifier
 
Relative abundance (%): 0.07
Amount0.07
Unit1
Property / Ecosystem
 
Property / Ecosystem: plant metagenome / rank
 
Normal rank
Property / Ecosystem: plant metagenome / qualifier
 
Prevalence (%): 15.9
Amount15.9
Unit1
Property / Ecosystem: plant metagenome / qualifier
 
Relative abundance (%): 0.35
Amount0.35
Unit1
Property / Ecosystem
 
Property / Ecosystem: soil metagenome / rank
 
Normal rank
Property / Ecosystem: soil metagenome / qualifier
 
Prevalence (%): 22.1
Amount22.1
Unit1
Property / Ecosystem: soil metagenome / qualifier
 
Relative abundance (%): 0.13
Amount0.13
Unit1
Property / Ecosystem
 
Property / Ecosystem: human oral metagenome / rank
 
Normal rank
Property / Ecosystem: human oral metagenome / qualifier
 
Prevalence (%): 0.8
Amount0.8
Unit1
Property / Ecosystem: human oral metagenome / qualifier
 
Relative abundance (%): 0.01
Amount0.01
Unit1
Property / Ecosystem
 
Property / Ecosystem: activated sludge metagenome / rank
 
Normal rank
Property / Ecosystem: activated sludge metagenome / qualifier
 
Prevalence (%): 26.7
Amount26.7
Unit1
Property / Ecosystem: activated sludge metagenome / qualifier
 
Relative abundance (%): 0.05
Amount0.05
Unit1
Property / Ecosystem
 
Property / Ecosystem: wastewater metagenome / rank
 
Normal rank
Property / Ecosystem: wastewater metagenome / qualifier
 
Prevalence (%): 41.8
Amount41.8
Unit1
Property / Ecosystem: wastewater metagenome / qualifier
 
Relative abundance (%): 0.87
Amount0.87
Unit1
Property / Ecosystem
 
Property / Ecosystem: rhizosphere metagenome / rank
 
Normal rank
Property / Ecosystem: rhizosphere metagenome / qualifier
 
Prevalence (%): 45.2
Amount45.2
Unit1
Property / Ecosystem: rhizosphere metagenome / qualifier
 
Relative abundance (%): 0.07
Amount0.07
Unit1
Property / Ecosystem
 
Property / Ecosystem: marine sediment metagenome / rank
 
Normal rank
Property / Ecosystem: marine sediment metagenome / qualifier
 
Prevalence (%): 11.4
Amount11.4
Unit1
Property / Ecosystem: marine sediment metagenome / qualifier
 
Relative abundance (%): 0.96
Amount0.96
Unit1
Property / Ecosystem
 
Property / Ecosystem: human lung metagenome / rank
 
Normal rank
Property / Ecosystem: human lung metagenome / qualifier
 
Prevalence (%): 1.9
Amount1.9
Unit1
Property / Ecosystem: human lung metagenome / qualifier
 
Relative abundance (%): 0.2
Amount0.2
Unit1
Property / Ecosystem
 
Property / Ecosystem: bovine gut metagenome / rank
 
Normal rank
Property / Ecosystem: bovine gut metagenome / qualifier
 
Prevalence (%): 6.2
Amount6.2
Unit1
Property / Ecosystem: bovine gut metagenome / qualifier
 
Relative abundance (%): 0.03
Amount0.03
Unit1
Property / Ecosystem
 
Property / Ecosystem: human skin metagenome / rank
 
Normal rank
Property / Ecosystem: human skin metagenome / qualifier
 
Prevalence (%): 7.2
Amount7.2
Unit1
Property / Ecosystem: human skin metagenome / qualifier
 
Relative abundance (%): 0.3
Amount0.3
Unit1
Property / Ecosystem
 
Property / Ecosystem: human gut metagenome / rank
 
Normal rank
Property / Ecosystem: human gut metagenome / qualifier
 
Prevalence (%): 1.6
Amount1.6
Unit1
Property / Ecosystem: human gut metagenome / qualifier
 
Relative abundance (%): 0.12
Amount0.12
Unit1
Property / MAGs
 
Property / MAGs: no MAG matches found / rank
 
Normal rank

Latest revision as of 21:27, 21 July 2026

genome assembly
Language Label Description Also known as
default for all languages
No label defined
    English
    GCA_001312645.1
    genome assembly

      Statements

      Protologue of the species
      no current description - please contribute here
      0 references
      Comparison to close relatives
      Rhodococcus coprophilus
      16S Identity %
      99.52606635071089
      POCPu
      56.940239043824704
      ANI %
      80.0523
      G+C Difference (%)
      1.5899999999999892
      0 references
      Rhodococcus phenolicus
      16S Identity %
      98.0092899800929
      POCPu
      57.467646030080445
      ANI %
      80.6424
      G+C Difference (%)
      3.069999999999993
      0 references
      Rhodococcus zopfii
      16S Identity %
      97.89687924016283
      POCPu
      53.38715338715338
      ANI %
      80.4892
      G+C Difference (%)
      2.9499999999999886
      0 references
      Rhodococcus rhodochrous
      16S Identity %
      97.61904761904762
      POCPu
      57.812973628372234
      ANI %
      80.7304
      G+C Difference (%)
      2.8799999999999955
      0 references
      Rhodococcus pyridinivorans
      16S Identity %
      97.5560081466395
      POCPu
      54.21750663129974
      ANI %
      80.806
      G+C Difference (%)
      2.559999999999988
      0 references
      Rhodococcus ruber
      16S Identity %
      97.2241029113067
      POCPu
      51.452720549392495
      ANI %
      79.9041
      G+C Difference (%)
      5.3799999999999955
      0 references
      Rhodococcus artemisiae
      16S Identity %
      97.15984147952443
      POCPu
      69.22665239496922
      ANI %
      90.0597
      G+C Difference (%)
      0.30999999999998806
      0 references
      Rhodococcus biphenylivorans
      16S Identity %
      97.1542025148908
      0 references
      Rhodococcus marinonascens
      16S Identity %
      97.00680272108843
      POCPu
      38.04993149642259
      G+C Difference (%)
      0.8800000000000097
      0 references
      Nocardia coeliaca
      16S Identity %
      96.8063872255489
      0 references
      Antrihabitans stalactiti
      16S Identity %
      96.62766689607707
      POCPu
      33.96264855687606
      G+C Difference (%)
      1.480000000000004
      0 references
      Rhodococcus pseudokoreensis
      16S Identity %
      96.56084656084656
      POCPu
      41.9128635475342
      ANI %
      78.6204
      G+C Difference (%)
      1.9899999999999949
      0 references
      Tsukamurella wratislaviensis
      16S Identity %
      96.4625850340136
      0 references
      Rhodococcus oxybenzonivorans
      16S Identity %
      96.40635798203179
      POCPu
      44.13281348258081
      ANI %
      78.6228
      G+C Difference (%)
      0.28999999999999204
      0 references
      Rhodococcus erythropolis
      16S Identity %
      96.39945652173914
      POCPu
      42.563996980303344
      ANI %
      78.2277
      G+C Difference (%)
      2.8900000000000077
      0 references
      Rhodococcus koreensis
      16S Identity %
      96.32402995234854
      POCPu
      41.38433924164236
      ANI %
      78.5633
      G+C Difference (%)
      2.089999999999989
      0 references
      Rhodococcus triatomae
      16S Identity %
      96.21109607577807
      POCPu
      43.404620668123634
      ANI %
      78.8128
      G+C Difference (%)
      3.3900000000000006
      0 references
      Rhodococcus electrodiphilus
      16S Identity %
      96.17486338797814
      0 references
      Rhodococcus qingshengii
      16S Identity %
      96.14604462474645
      POCPu
      41.269532516371655
      ANI %
      78.325
      G+C Difference (%)
      2.940000000000005
      0 references
      Rhodococcus olei
      16S Identity %
      96.14325068870524
      POCPu
      43.58462306540189
      ANI %
      78.8915
      G+C Difference (%)
      4.849999999999994
      0 references
      Rhodococcus gannanensis
      16S Identity %
      96.09530112508273
      0 references
      Rhodococcus rhodnii
      16S Identity %
      96.05710401087696
      POCPu
      18.875196510979258
      G+C Difference (%)
      0.9899999999999949
      0 references
      Nocardia amamiensis
      16S Identity %
      96.05442176870748
      POCPu
      29.26224426534408
      G+C Difference (%)
      2.1199999999999903
      0 references
      Nocardia globerula
      16S Identity %
      95.9414504324684
      0 references
      Rhodococcus oryzae
      16S Identity %
      95.92391304347827
      POCPu
      41.31250938579366
      ANI %
      78.6711
      G+C Difference (%)
      3.8799999999999955
      0 references
      Rhodococcus pedocola
      16S Identity %
      95.85034013605443
      0 references
      Rhodococcus equi
      16S Identity %
      95.83333333333334
      0 references
      Rhodococcus canchipurensis
      16S Identity %
      95.77557755775578
      0 references
      Millisia brevis
      16S Identity %
      95.75878064943672
      POCPu
      30.668670172802404
      G+C Difference (%)
      3.8900000000000006
      0 references
      Rhodococcus globerulus
      16S Identity %
      95.71136827773996
      POCPu
      47.975653125427435
      ANI %
      77.8602
      G+C Difference (%)
      3.6200000000000045
      0 references
      Rhodococcus subtropicus
      16S Identity %
      95.7010582010582
      0 references
      Nocardia shimofusensis
      16S Identity %
      95.54521276595744
      POCPu
      36.28003136807585
      ANI %
      77.8943
      G+C Difference (%)
      3.8299999999999983
      0 references
      Nocardia arthritidis
      16S Identity %
      95.4937044400265
      POCPu
      32.53238472380697
      ANI %
      77.7069
      G+C Difference (%)
      3.1699999999999875
      0 references
      Rhodococcus imtechensis
      16S Identity %
      95.47270306258322
      0 references
      Rhodococcus opacus
      16S Identity %
      95.44846050870147
      POCPu
      43.56671899529043
      ANI %
      78.58
      G+C Difference (%)
      2.0799999999999983
      0 references
      Nocardia sputi
      16S Identity %
      95.40918163672654
      0 references
      Nocardia pneumoniae
      16S Identity %
      95.38461538461539
      POCPu
      31.822686133315713
      ANI %
      77.7645
      G+C Difference (%)
      2.809999999999988
      0 references
      Nocardia pseudobrasiliensis
      16S Identity %
      95.36290322580645
      POCPu
      28.89582568245807
      G+C Difference (%)
      2.049999999999997
      0 references
      Nocardia higoensis
      16S Identity %
      95.31145344943067
      POCPu
      36.05238030282363
      ANI %
      77.8438
      G+C Difference (%)
      4.019999999999996
      0 references
      Nocardia thailandica
      16S Identity %
      95.18394648829431
      POCPu
      32.51637296603875
      ANI %
      77.7462
      G+C Difference (%)
      6.349999999999994
      0 references
      Nocardia exalbida
      16S Identity %
      95.18394648829431
      POCPu
      34.25589536957527
      ANI %
      77.7239
      G+C Difference (%)
      3.319999999999993
      0 references
      Rhodococcus soli
      16S Identity %
      95.04950495049505
      0 references
      Nocardia gipuzkoensis
      16S Identity %
      95.04296100462656
      0 references
      Nocardia yamanashiensis
      16S Identity %
      94.98997995991984
      POCPu
      29.762473143948437
      G+C Difference (%)
      2.779999999999987
      0 references
      Nocardia kroppenstedtii
      16S Identity %
      94.97686715135492
      0 references
      Nocardia barduliensis
      16S Identity %
      94.97686715135492
      POCPu
      33.065115127506814
      ANI %
      77.7098
      G+C Difference (%)
      3.2099999999999937
      0 references
      Nocardia aobensis
      16S Identity %
      94.89728296885355
      POCPu
      34.18217433888345
      ANI %
      77.2827
      G+C Difference (%)
      2.6999999999999886
      0 references
      Gordonia polyisoprenivorans
      16S Identity %
      94.71598414795245
      POCPu
      30.307152573924252
      G+C Difference (%)
      1.5799999999999983
      0 references
      Gordonia tangerina
      16S Identity %
      94.25742574257426
      POCPu
      32.15174598386002
      G+C Difference (%)
      1.25
      0 references
      Prescottella soli
      POCPu
      43.298738146793106
      ANI %
      79.2542
      G+C Difference (%)
      3.3699999999999903
      0 references
      Prescottella subtropica
      POCPu
      42.2020558946354
      ANI %
      79.1987
      G+C Difference (%)
      3.839999999999989
      0 references
      Prescottella equi
      POCPu
      45.81098436201556
      ANI %
      79.0461
      G+C Difference (%)
      3.5
      0 references
      Rhodococcus wratislaviensis
      POCPu
      43.93213314337521
      ANI %
      78.5573
      G+C Difference (%)
      2.1499999999999915
      0 references
      Rhodococcus baikonurensis
      POCPu
      35.54668244109238
      ANI %
      78.0718
      G+C Difference (%)
      2.970000000000006
      0 references
      Carbon source
      starch
      0 references
      CAZyme
      GH4
      Occurance
      3
      0 references
      GH23
      Occurance
      13
      0 references
      GH3
      Occurance
      1
      0 references
      GH2
      Occurance
      1
      0 references
      GH28
      Occurance
      2
      0 references
      GH77
      Occurance
      1
      0 references
      GH13
      Occurance
      11
      0 references
      GH6
      Occurance
      2
      0 references
      GH101
      Occurance
      1
      0 references
      GH43
      Occurance
      1
      0 references
      GH65
      Occurance
      1
      0 references
      GH57
      Occurance
      1
      0 references
      GH0
      Occurance
      4
      0 references
      GH135
      Occurance
      1
      0 references
      GH63
      Occurance
      1
      0 references
      GH15
      Occurance
      3
      0 references
      GH76
      Occurance
      1
      0 references
      GH19
      Occurance
      3
      0 references
      GH1
      Occurance
      1
      0 references
      GT1
      Occurance
      18
      0 references
      GT53
      Occurance
      5
      0 references
      GT4
      Occurance
      19
      0 references
      GT51
      Occurance
      5
      0 references
      GT2
      Occurance
      20
      0 references
      GT25
      Occurance
      1
      0 references
      GT26
      Occurance
      3
      0 references
      GT0
      Occurance
      8
      0 references
      GT28
      Occurance
      4
      0 references
      GT35
      Occurance
      2
      0 references
      GT87
      Occurance
      3
      0 references
      GT83
      Occurance
      1
      0 references
      GT39
      Occurance
      1
      0 references
      GT89
      Occurance
      2
      0 references
      GT21
      Occurance
      1
      0 references
      GT85
      Occurance
      2
      0 references
      GT20
      Occurance
      3
      0 references
      GT81
      Occurance
      2
      0 references
      CE14
      Occurance
      7
      0 references
      CE0
      Occurance
      4
      0 references
      CE4
      Occurance
      2
      0 references
      CE6
      Occurance
      1
      0 references
      CE5
      Occurance
      5
      0 references
      CE9
      Occurance
      2
      0 references
      CE1
      Occurance
      10
      0 references
      CE12
      Occurance
      1
      0 references
      CBM50
      Occurance
      6
      0 references
      CBM48
      Occurance
      5
      0 references
      CBM12
      Occurance
      1
      0 references
      CBM51
      Occurance
      1
      0 references
      CBM2
      Occurance
      5
      0 references
      CBM13
      Occurance
      3
      0 references
      CBM5
      Occurance
      2
      0 references
      CBM57
      Occurance
      1
      0 references
      Pathway
      Ecosystem
      MAGs
      no MAG matches found
      0 references
       
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