GCA_020057295.1 (Q89141): Difference between revisions
Appearance
Added qualifier: G+C Difference (%) (P22): 6.400000000000002 |
Created claim: MAGs (P28): no MAG matches found (Q42716) |
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| (164 intermediate revisions by the same user not shown) | |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium alcaliphilum / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium alcaliphilum / qualifier | |||||||
16S Identity %: 23.98286937901499
| |||||||
| Property / Comparison to close relatives: Methanobacterium alcaliphilum / qualifier | |||||||
POCPu: 2.09988649262202
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| Property / Comparison to close relatives: Methanobacterium alcaliphilum / qualifier | |||||||
G+C Difference (%): 2.41
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanocaldococcus indicus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanocaldococcus indicus / qualifier | |||||||
16S Identity %: 23.959827833572454
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium petrolearium / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium petrolearium / qualifier | |||||||
16S Identity %: 23.89251997095134
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| Property / Comparison to close relatives: Methanobacterium petrolearium / qualifier | |||||||
POCPu: 2.127064091799608
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| Property / Comparison to close relatives: Methanobacterium petrolearium / qualifier | |||||||
G+C Difference (%): 6.780000000000005
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium paludis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium paludis / qualifier | |||||||
16S Identity %: 23.81930184804928
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| Property / Comparison to close relatives: Methanobacterium paludis / qualifier | |||||||
POCPu: 1.9880174291938997
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| Property / Comparison to close relatives: Methanobacterium paludis / qualifier | |||||||
G+C Difference (%): 4.739999999999998
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanosphaera stadtmanae / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanosphaera stadtmanae / qualifier | |||||||
16S Identity %: 23.767123287671232
| |||||||
| Property / Comparison to close relatives: Methanosphaera stadtmanae / qualifier | |||||||
POCPu: 2.127659574468085
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| Property / Comparison to close relatives: Methanosphaera stadtmanae / qualifier | |||||||
G+C Difference (%): 3.3599999999999994
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobrevibacter olleyae / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobrevibacter olleyae / qualifier | |||||||
16S Identity %: 23.722044728434504
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| Property / Comparison to close relatives: Methanobrevibacter olleyae / qualifier | |||||||
POCPu: 2.225174360677516
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| Property / Comparison to close relatives: Methanobrevibacter olleyae / qualifier | |||||||
G+C Difference (%): 4.189999999999998
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium congolense / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium congolense / qualifier | |||||||
16S Identity %: 23.65666434054431
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| Property / Comparison to close relatives: Methanobacterium congolense / qualifier | |||||||
POCPu: 2.3836231071228267
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| Property / Comparison to close relatives: Methanobacterium congolense / qualifier | |||||||
G+C Difference (%): 7.5000000000000036
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium kanagiense / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium kanagiense / qualifier | |||||||
16S Identity %: 23.655172413793103
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium aggregans / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium aggregans / qualifier | |||||||
16S Identity %: 23.638968481375358
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| Property / Comparison to close relatives: Methanobacterium aggregans / qualifier | |||||||
POCPu: 2.6034133641886026
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| Property / Comparison to close relatives: Methanobacterium aggregans / qualifier | |||||||
G+C Difference (%): 7.150000000000002
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium arcticum / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium arcticum / qualifier | |||||||
16S Identity %: 23.39675828047921
| |||||||
| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanocaldococcus lauensis / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanocaldococcus lauensis / qualifier | |||||||
16S Identity %: 23.386484434320426
| |||||||
| Property / Comparison to close relatives: Methanocaldococcus lauensis / qualifier | |||||||
POCPu: 3.112701252236136
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| Property / Comparison to close relatives: Methanocaldococcus lauensis / qualifier | |||||||
G+C Difference (%): 1.9399999999999977
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanocaldococcus vulcanius / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanocaldococcus vulcanius / qualifier | |||||||
16S Identity %: 23.278921220723916
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| Property / Comparison to close relatives: Methanocaldococcus vulcanius / qualifier | |||||||
POCPu: 2.8504359490274984
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| Property / Comparison to close relatives: Methanocaldococcus vulcanius / qualifier | |||||||
G+C Difference (%): 0.5899999999999999
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanocaldococcus fervens / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanocaldococcus fervens / qualifier | |||||||
16S Identity %: 23.198352779684285
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| Property / Comparison to close relatives: Methanocaldococcus fervens / qualifier | |||||||
POCPu: 3.005941978329256
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| Property / Comparison to close relatives: Methanocaldococcus fervens / qualifier | |||||||
G+C Difference (%): 1.2300000000000004
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobrevibacter curvatus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobrevibacter curvatus / qualifier | |||||||
16S Identity %: 23.185185185185187
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| Property / Comparison to close relatives: Methanobrevibacter curvatus / qualifier | |||||||
POCPu: 2.0043845912934546
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| Property / Comparison to close relatives: Methanobrevibacter curvatus / qualifier | |||||||
G+C Difference (%): 5.27
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanocaldococcus infernus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanocaldococcus infernus / qualifier | |||||||
16S Identity %: 22.565157750342934
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| Property / Comparison to close relatives: Methanocaldococcus infernus / qualifier | |||||||
POCPu: 3.1910946196660483
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| Property / Comparison to close relatives: Methanocaldococcus infernus / qualifier | |||||||
G+C Difference (%): 2.629999999999999
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| Property / Comparison to close relatives | |||||||
| Property / Comparison to close relatives: Methanobacterium lacus / rank | |||||||
Normal rank | |||||||
| Property / Comparison to close relatives: Methanobacterium lacus / qualifier | |||||||
16S Identity %: 22.380239520958085
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| Property / Comparison to close relatives: Methanobacterium lacus / qualifier | |||||||
POCPu: 2.137323002938819
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| Property / Comparison to close relatives: Methanobacterium lacus / qualifier | |||||||
G+C Difference (%): 4.84
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| Property / Carbon source | |||||||
| Property / Carbon source: starch / rank | |||||||
Normal rank | |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GH13 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH13 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: GH28 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH28 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH57 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH57 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GH0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GH0 / qualifier | |||||||
Occurance: 3
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GT13 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT13 / qualifier | |||||||
Occurance: 2
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| Property / CAZyme | |||||||
| Property / CAZyme: GT66 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT66 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT4 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT4 / qualifier | |||||||
Occurance: 11
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| Property / CAZyme | |||||||
| Property / CAZyme: GT3 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT3 / qualifier | |||||||
Occurance: 1
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GT35 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT35 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: GT2 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT2 / qualifier | |||||||
Occurance: 14
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| Property / CAZyme | |||||||
| Property / CAZyme: GT0 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT0 / qualifier | |||||||
Occurance: 2
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: GT1 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: GT1 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CE14 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CE14 / qualifier | |||||||
Occurance: 1
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| Property / CAZyme | |||||||
| Property / CAZyme: CBM50 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM50 / qualifier | |||||||
Occurance: 5
| |||||||
| Property / CAZyme | |||||||
| Property / CAZyme: CBM13 / rank | |||||||
Normal rank | |||||||
| Property / CAZyme: CBM13 / qualifier | |||||||
Occurance: 1
| |||||||
| Property / Pathway | |||||||
| Property / Pathway: Glycolysis, core module involving three-carbon compounds / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Glycolysis, core module involving three-carbon compounds / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc / rank | |||||||
Normal rank | |||||||
| Property / Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man / rank | |||||||
Normal rank | |||||||
| Property / Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA / rank | |||||||
Normal rank | |||||||
| Property / Pathway: UDP-GalNAcA biosynthesis, UDP-GlcNAc => UDP-GalNAcA / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Mannose degradation / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Mannose degradation / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Acetyl-CoA to acetate / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Acetyl-CoA to acetate / qualifier | |||||||
| Property / Pathway | |||||||
| Property / Pathway: Lactate production / rank | |||||||
Normal rank | |||||||
| Property / Pathway: Lactate production / qualifier | |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: insect gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: insect gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: mouse gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: mouse gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human vaginal metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human vaginal metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: freshwater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Prevalence (%): 2.8
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| Property / Ecosystem: freshwater metagenome / qualifier | |||||||
Relative abundance (%): 0.01
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| Property / Ecosystem | |||||||
| Property / Ecosystem: coral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: coral metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: coral metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: pig gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: pig gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: chicken gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: chicken gut metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine metagenome / qualifier | |||||||
Prevalence (%): 0.1
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| Property / Ecosystem: marine metagenome / qualifier | |||||||
Relative abundance (%): 0.03
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| Property / Ecosystem | |||||||
| Property / Ecosystem: plant metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: plant metagenome / qualifier | |||||||
Prevalence (%): 0.2
| |||||||
| Property / Ecosystem: plant metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: soil metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: soil metagenome / qualifier | |||||||
Prevalence (%): 0.3
| |||||||
| Property / Ecosystem: soil metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human oral metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human oral metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: activated sludge metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Prevalence (%): 0.3
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| Property / Ecosystem: activated sludge metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: wastewater metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Prevalence (%): 0.2
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| Property / Ecosystem: wastewater metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: rhizosphere metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Prevalence (%): 0.4
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| Property / Ecosystem: rhizosphere metagenome / qualifier | |||||||
Relative abundance (%): 0.05
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| Property / Ecosystem | |||||||
| Property / Ecosystem: marine sediment metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: marine sediment metagenome / qualifier | |||||||
Relative abundance (%): 0
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| Property / Ecosystem | |||||||
| Property / Ecosystem: human lung metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Prevalence (%): 0
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| Property / Ecosystem: human lung metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: bovine gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: bovine gut metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: human skin metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human skin metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / Ecosystem | |||||||
| Property / Ecosystem: human gut metagenome / rank | |||||||
Normal rank | |||||||
| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Prevalence (%): 0
| |||||||
| Property / Ecosystem: human gut metagenome / qualifier | |||||||
Relative abundance (%): 0
| |||||||
| Property / MAGs | |||||||
| Property / MAGs: no MAG matches found / rank | |||||||
Normal rank | |||||||
Latest revision as of 08:12, 11 August 2026
genome assembly
| Language | Label | Description | Also known as |
|---|---|---|---|
| default for all languages | No label defined |
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| English | GCA_020057295.1 |
genome assembly |
Statements
no current description - please contribute here
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