Jump to content

GCF_000152805.1 (Q42831): Difference between revisions

From wikibase
Added qualifier: Relative abundance (%) (P19): 0
TomHitch (talk | contribs)
Changed claim: Protologue of the species (P20): Analysis of the representative genome (GCF_000152805.1) for Maritimibacter alkaliphilus confirmed this species as distinct from its closest relatives, with all ANI comparisons being <80% and 16S rRNA gene identity values being <97%.POCPu values >50% were obtained to neighbouring genera (Celeribacter persicus, 54.6%; Roseibacterium elongatum, 54.2%), however GTDB and 16S rRNA gene identity values confirm this species as a member of the genus Marit...
 
(28 intermediate revisions by 2 users not shown)
Property / Protologue of the speciesProperty / Protologue of the species
no current description - please contribute here
Analysis of the representative genome (GCF_000152805.1) for Maritimibacter alkaliphilus confirmed this species as distinct from its closest relatives, with all ANI comparisons being <80% and 16S rRNA gene identity values being <97%.POCPu values >50% were obtained to neighbouring genera (Celeribacter persicus, 54.6%; Roseibacterium elongatum, 54.2%), however GTDB and 16S rRNA gene identity values confirm this species as a member of the genus Maritimibacter. Ecological analysis of 1,000 16S rRNA gene amplicon samples from different ecosystems identified Maritimibacter alkaliphilus as being most prevalent (53.2%) in coral metagenomes, where it was had the highest relative abundance (2.02%). Genome analysis predict the presence of metabolic modules for the utilisation of mannose, degradation of amino acids (aspartate, alanine, glycine, isoleucine, leucine, methionine, proline, cysteine, glutamate, arginine), along with production and utilisation of lactate.
Property / Ecosystem
 
Property / Ecosystem: Soil metagenome / rank
 
Normal rank
Property / Ecosystem: Soil metagenome / qualifier
 
Prevalence (%): 3.3
Amount3.3
Unit1
Property / Ecosystem: Soil metagenome / qualifier
 
Relative abundance (%): 0.1
Amount0.1
Unit1
Property / Ecosystem
 
Property / Ecosystem: Mouse gut metagenome / rank
 
Normal rank
Property / Ecosystem: Mouse gut metagenome / qualifier
 
Prevalence (%): 0.1
Amount0.1
Unit1
Property / Ecosystem: Mouse gut metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: Coral metagenome / rank
 
Normal rank
Property / Ecosystem: Coral metagenome / qualifier
 
Prevalence (%): 53.2
Amount53.2
Unit1
Property / Ecosystem: Coral metagenome / qualifier
 
Relative abundance (%): 2.02
Amount2.02
Unit1
Property / Ecosystem
 
Property / Ecosystem: Human skin metagenome / rank
 
Normal rank
Property / Ecosystem: Human skin metagenome / qualifier
 
Prevalence (%): 0.8
Amount0.8
Unit1
Property / Ecosystem: Human skin metagenome / qualifier
 
Relative abundance (%): 0.04
Amount0.04
Unit1
Property / Ecosystem
 
Property / Ecosystem: Plant metagenome / rank
 
Normal rank
Property / Ecosystem: Plant metagenome / qualifier
 
Prevalence (%): 5
Amount5
Unit1
Property / Ecosystem: Plant metagenome / qualifier
 
Relative abundance (%): 0.24
Amount0.24
Unit1
Property / Ecosystem
 
Property / Ecosystem: Human gut metagenome / rank
 
Normal rank
Property / Ecosystem: Human gut metagenome / qualifier
 
Prevalence (%): 0.2
Amount0.2
Unit1
Property / Ecosystem: Human gut metagenome / qualifier
 
Relative abundance (%): 0.01
Amount0.01
Unit1
Property / Ecosystem
 
Property / Ecosystem: Marine metagenome / rank
 
Normal rank
Property / Ecosystem: Marine metagenome / qualifier
 
Prevalence (%): 23.8
Amount23.8
Unit1
Property / Ecosystem: Marine metagenome / qualifier
 
Relative abundance (%): 0.53
Amount0.53
Unit1
Property / Ecosystem
 
Property / Ecosystem: Insect gut metagenome / rank
 
Normal rank
Property / Ecosystem: Insect gut metagenome / qualifier
 
Prevalence (%): 1.1
Amount1.1
Unit1
Property / Ecosystem: Insect gut metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / MAGs
 
Property / MAGs: no MAG matches found / rank
 
Normal rank

Latest revision as of 02:49, 6 July 2026

genome assembly
Language Label Description Also known as
default for all languages
No label defined
    English
    GCF_000152805.1
    genome assembly

      Statements

      Analysis of the representative genome (GCF_000152805.1) for Maritimibacter alkaliphilus confirmed this species as distinct from its closest relatives, with all ANI comparisons being <80% and 16S rRNA gene identity values being <97%.POCPu values >50% were obtained to neighbouring genera (Celeribacter persicus, 54.6%; Roseibacterium elongatum, 54.2%), however GTDB and 16S rRNA gene identity values confirm this species as a member of the genus Maritimibacter. Ecological analysis of 1,000 16S rRNA gene amplicon samples from different ecosystems identified Maritimibacter alkaliphilus as being most prevalent (53.2%) in coral metagenomes, where it was had the highest relative abundance (2.02%). Genome analysis predict the presence of metabolic modules for the utilisation of mannose, degradation of amino acids (aspartate, alanine, glycine, isoleucine, leucine, methionine, proline, cysteine, glutamate, arginine), along with production and utilisation of lactate.
      0 references
      0 references
      0 references
      96.21472814865794
      54.60549183176921
      79.1045
      0 references
      96.17224880382776
      54.24729831615984
      77.9464
      0 references
      96.04885057471265
      56.81759379042691
      78.0069
      0 references
      95.97741707833451
      52.845933491094776
      78.3801
      0 references
      95.7983193277311
      51.489958972144244
      79.1277
      0 references
      95.73724668064291
      53.436058936002695
      78.6356
      0 references
      95.73724668064291
      61.13020236731577
      79.7984
      0 references
      95.60975609756098
      0 references
      95.57273366127899
      55.03709021296961
      78.2802
      0 references
      95.46703296703298
      53.063583815028906
      77.7016
      0 references
      95.41607898448518
      56.180189026635574
      77.9936
      0 references
      95.39518900343643
      53.92651719685409
      78.4405
      0 references
      95.36842105263158
      59.02921555095468
      79.4764
      0 references
      95.30812324929971
      51.43342776203966
      78.553
      0 references
      95.29494382022472
      53.49808169713383
      78.4056
      0 references
      95.28105482303955
      52.74901380670612
      77.6507
      0 references
      95.25801952580196
      53.40005132152938
      77.8279
      0 references
      95.14899514899516
      58.158665765156634
      79.4103
      0 references
      95.11691884456671
      54.77788061082832
      78.3426
      0 references
      95.08081517919888
      56.881822496440435
      77.9235
      0 references
      95.07389162561576
      46.62501394622336
      0 references
      95.04814305364512
      54.26302265825742
      78.084
      0 references
      95.03496503496504
      55.69052954357825
      79.7037
      0 references
      95.03149055283416
      56.837721655024176
      77.7057
      0 references
      94.95091164095372
      52.4244879064923
      78.5287
      0 references
      94.9367088607595
      50.93879541575226
      77.5494
      0 references
      94.87534626038781
      56.9076258320682
      79.967
      0 references
      0 references
      0 references
      94.72241261137766
      52.863777089783284
      78.0363
      0 references
      0 references
      94.6890286512928
      52.874846488779724
      78.1116
      0 references
      94.59084604715673
      54.55889040472942
      78.4752
      0 references
      94.5242984257358
      52.90423861852433
      77.8822
      0 references
      94.5092656142759
      51.984999353420406
      0 references
      94.48275862068965
      52.84552845528455
      78.8806
      0 references
      94.45585215605749
      55.257009345794394
      0 references
      0 references
      94.3835616438356
      49.28025191183086
      0 references
      94.3835616438356
      50.33532041728763
      77.2813
      0 references
      0 references
      94.30727023319616
      51.49552520018841
      77.3193
      0 references
      94.29945054945054
      54.382547721075184
      77.7415
      0 references
      94.29160935350757
      49.41860465116279
      0 references
      0 references
      94.12568306010928
      55.22838807097018
      78.5969
      0 references
      94.10555174777244
      52.71326741779719
      78.8653
      0 references
      94.04109589041096
      55.06715506715507
      77.0463
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references
      0 references