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GCA_017608575.1 (Q168092): Difference between revisions

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Added qualifier: 16S Identity % (P3): 23.636363636363637
 
(178 intermediate revisions by the same user not shown)
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanothermobacter tenebrarum / rank
 
Normal rank
Property / Comparison to close relatives: Methanothermobacter tenebrarum / qualifier
 
16S Identity %: 23.579545454545457
Amount23.579545454545457
Unit1
Property / Comparison to close relatives: Methanothermobacter tenebrarum / qualifier
 
POCPu: 4.893846707448723
Amount4.893846707448723
Unit1
Property / Comparison to close relatives: Methanothermobacter tenebrarum / qualifier
 
G+C Difference (%): 3.769999999999996
Amount3.769999999999996
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Sulfurihydrogenibium yellowstonense / rank
 
Normal rank
Property / Comparison to close relatives: Sulfurihydrogenibium yellowstonense / qualifier
 
16S Identity %: 23.517241379310345
Amount23.517241379310345
Unit1
Property / Comparison to close relatives: Sulfurihydrogenibium yellowstonense / qualifier
 
POCPu: 0.8101851851851851
Amount0.8101851851851851
Unit1
Property / Comparison to close relatives: Sulfurihydrogenibium yellowstonense / qualifier
 
G+C Difference (%): 5.460000000000001
Amount5.460000000000001
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanotorris formicicus / rank
 
Normal rank
Property / Comparison to close relatives: Methanotorris formicicus / qualifier
 
16S Identity %: 23.319615912208505
Amount23.319615912208505
Unit1
Property / Comparison to close relatives: Methanotorris formicicus / qualifier
 
POCPu: 4.5877446262431825
Amount4.5877446262431825
Unit1
Property / Comparison to close relatives: Methanotorris formicicus / qualifier
 
G+C Difference (%): 5.840000000000003
Amount5.840000000000003
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanobacterium alcaliphilum / rank
 
Normal rank
Property / Comparison to close relatives: Methanobacterium alcaliphilum / qualifier
 
16S Identity %: 23.278921220723916
Amount23.278921220723916
Unit1
Property / Comparison to close relatives: Methanobacterium alcaliphilum / qualifier
 
POCPu: 3.497109826589596
Amount3.497109826589596
Unit1
Property / Comparison to close relatives: Methanobacterium alcaliphilum / qualifier
 
G+C Difference (%): 4.880000000000003
Amount4.880000000000003
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanobacterium movens / rank
 
Normal rank
Property / Comparison to close relatives: Methanobacterium movens / qualifier
 
16S Identity %: 23.275261324041814
Amount23.275261324041814
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Archaeoglobus sulfaticallidus / rank
 
Normal rank
Property / Comparison to close relatives: Archaeoglobus sulfaticallidus / qualifier
 
16S Identity %: 23.1410701876303
Amount23.1410701876303
Unit1
Property / Comparison to close relatives: Archaeoglobus sulfaticallidus / qualifier
 
POCPu: 3.585071995298266
Amount3.585071995298266
Unit1
Property / Comparison to close relatives: Archaeoglobus sulfaticallidus / qualifier
 
G+C Difference (%): 4.960000000000001
Amount4.960000000000001
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanobacterium flexile / rank
 
Normal rank
Property / Comparison to close relatives: Methanobacterium flexile / qualifier
 
16S Identity %: 23.119777158774372
Amount23.119777158774372
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Nitrosopumilus piranensis / rank
 
Normal rank
Property / Comparison to close relatives: Nitrosopumilus piranensis / qualifier
 
16S Identity %: 23.045267489711936
Amount23.045267489711936
Unit1
Property / Comparison to close relatives: Nitrosopumilus piranensis / qualifier
 
POCPu: 1.1814601635867918
Amount1.1814601635867918
Unit1
Property / Comparison to close relatives: Nitrosopumilus piranensis / qualifier
 
G+C Difference (%): 4.460000000000001
Amount4.460000000000001
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Nitrosopumilus ureiphilus / rank
 
Normal rank
Property / Comparison to close relatives: Nitrosopumilus ureiphilus / qualifier
 
16S Identity %: 23.045267489711936
Amount23.045267489711936
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Nitrosopumilus adriaticus / rank
 
Normal rank
Property / Comparison to close relatives: Nitrosopumilus adriaticus / qualifier
 
16S Identity %: 23.045267489711936
Amount23.045267489711936
Unit1
Property / Comparison to close relatives: Nitrosopumilus adriaticus / qualifier
 
POCPu: 1.0098010098010097
Amount1.0098010098010097
Unit1
Property / Comparison to close relatives: Nitrosopumilus adriaticus / qualifier
 
G+C Difference (%): 4.8700000000000045
Amount4.8700000000000045
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Cuniculiplasma divulgatum / rank
 
Normal rank
Property / Comparison to close relatives: Cuniculiplasma divulgatum / qualifier
 
16S Identity %: 22.923816060398078
Amount22.923816060398078
Unit1
Property / Comparison to close relatives: Cuniculiplasma divulgatum / qualifier
 
POCPu: 2.021174205967276
Amount2.021174205967276
Unit1
Property / Comparison to close relatives: Cuniculiplasma divulgatum / qualifier
 
G+C Difference (%): 0.980000000000004
Amount0.980000000000004
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Nitrosopumilus cobalaminigenes / rank
 
Normal rank
Property / Comparison to close relatives: Nitrosopumilus cobalaminigenes / qualifier
 
16S Identity %: 22.90809327846365
Amount22.90809327846365
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanothermobacter thermautotrophicus / rank
 
Normal rank
Property / Comparison to close relatives: Methanothermobacter thermautotrophicus / qualifier
 
16S Identity %: 22.56305385139741
Amount22.56305385139741
Unit1
Property / Comparison to close relatives: Methanothermobacter thermautotrophicus / qualifier
 
POCPu: 4.055390702274975
Amount4.055390702274975
Unit1
Property / Comparison to close relatives: Methanothermobacter thermautotrophicus / qualifier
 
G+C Difference (%): 11.259999999999998
Amount11.259999999999998
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanothermobacter crinale / rank
 
Normal rank
Property / Comparison to close relatives: Methanothermobacter crinale / qualifier
 
16S Identity %: 22.353760445682454
Amount22.353760445682454
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Conexivisphaera calida / rank
 
Normal rank
Property / Comparison to close relatives: Conexivisphaera calida / qualifier
 
16S Identity %: 22.162162162162165
Amount22.162162162162165
Unit1
Property / Comparison to close relatives: Conexivisphaera calida / qualifier
 
POCPu: 1.3713460844460483
Amount1.3713460844460483
Unit1
Property / Comparison to close relatives: Conexivisphaera calida / qualifier
 
G+C Difference (%): 23.79
Amount23.79
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanococcus aeolicus / rank
 
Normal rank
Property / Comparison to close relatives: Methanococcus aeolicus / qualifier
 
16S Identity %: 22.08504801097394
Amount22.08504801097394
Unit1
Property / Comparison to close relatives: Methanococcus aeolicus / qualifier
 
POCPu: 3.6539895600298284
Amount3.6539895600298284
Unit1
Property / Comparison to close relatives: Methanococcus aeolicus / qualifier
 
G+C Difference (%): 8.240000000000002
Amount8.240000000000002
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanobacterium thermaggregans / rank
 
Normal rank
Property / Comparison to close relatives: Methanobacterium thermaggregans / qualifier
 
16S Identity %: 21.947776993648553
Amount21.947776993648553
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanobrevibacter ruminantium / rank
 
Normal rank
Property / Comparison to close relatives: Methanobrevibacter ruminantium / qualifier
 
16S Identity %: 21.88811188811189
Amount21.88811188811189
Unit1
Property / Comparison to close relatives: Methanobrevibacter ruminantium / qualifier
 
POCPu: 3.2479141835518477
Amount3.2479141835518477
Unit1
Property / Comparison to close relatives: Methanobrevibacter ruminantium / qualifier
 
G+C Difference (%): 5.640000000000001
Amount5.640000000000001
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanothermobacter marburgensis / rank
 
Normal rank
Property / Comparison to close relatives: Methanothermobacter marburgensis / qualifier
 
16S Identity %: 21.54055896387185
Amount21.54055896387185
Unit1
Property / Comparison to close relatives: Methanothermobacter marburgensis / qualifier
 
POCPu: 4.199655765920826
Amount4.199655765920826
Unit1
Property / Comparison to close relatives: Methanothermobacter marburgensis / qualifier
 
G+C Difference (%): 10.36
Amount10.36
Unit1
Property / Comparison to close relatives
 
Property / Comparison to close relatives: Methanothermobacter wolfeii / rank
 
Normal rank
Property / Comparison to close relatives: Methanothermobacter wolfeii / qualifier
 
POCPu: 4.029304029304029
Amount4.029304029304029
Unit1
Property / Comparison to close relatives: Methanothermobacter wolfeii / qualifier
 
G+C Difference (%): 10.39
Amount10.39
Unit1
Property / CAZyme
 
Property / CAZyme: GH28 / rank
 
Normal rank
Property / CAZyme: GH28 / qualifier
 
Occurance: 1
Amount1
Unit1
Property / CAZyme
 
Property / CAZyme: GH13 / rank
 
Normal rank
Property / CAZyme: GH13 / qualifier
 
Occurance: 1
Amount1
Unit1
Property / CAZyme
 
Property / CAZyme: GH57 / rank
 
Normal rank
Property / CAZyme: GH57 / qualifier
 
Occurance: 1
Amount1
Unit1
Property / CAZyme
 
Property / CAZyme: GH0 / rank
 
Normal rank
Property / CAZyme: GH0 / qualifier
 
Occurance: 3
Amount3
Unit1
Property / CAZyme
 
Property / CAZyme: GT13 / rank
 
Normal rank
Property / CAZyme: GT13 / qualifier
 
Occurance: 1
Amount1
Unit1
Property / CAZyme
 
Property / CAZyme: GT66 / rank
 
Normal rank
Property / CAZyme: GT66 / qualifier
 
Occurance: 1
Amount1
Unit1
Property / CAZyme
 
Property / CAZyme: GT3 / rank
 
Normal rank
Property / CAZyme: GT3 / qualifier
 
Occurance: 1
Amount1
Unit1
Property / CAZyme
 
Property / CAZyme: GT4 / rank
 
Normal rank
Property / CAZyme: GT4 / qualifier
 
Occurance: 11
Amount11
Unit1
Property / CAZyme
 
Property / CAZyme: GT2 / rank
 
Normal rank
Property / CAZyme: GT2 / qualifier
 
Occurance: 7
Amount7
Unit1
Property / CAZyme
 
Property / CAZyme: GT1 / rank
 
Normal rank
Property / CAZyme: GT1 / qualifier
 
Occurance: 3
Amount3
Unit1
Property / CAZyme
 
Property / CAZyme: CBM50 / rank
 
Normal rank
Property / CAZyme: CBM50 / qualifier
 
Occurance: 1
Amount1
Unit1
Property / CAZyme
 
Property / CAZyme: CBM2 / rank
 
Normal rank
Property / CAZyme: CBM2 / qualifier
 
Occurance: 1
Amount1
Unit1
Property / Pathway
 
Property / Pathway: Glycolysis, core module involving three-carbon compounds / rank
 
Normal rank
Property / Pathway: Glycolysis, core module involving three-carbon compounds / qualifier
 
Property / Pathway
 
Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / rank
 
Normal rank
Property / Pathway: PRPP biosynthesis, ribose 5P => PRPP / qualifier
 
Property / Pathway
 
Property / Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP / rank
 
Normal rank
Property / Pathway: Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP, CDP/CTP / qualifier
 
Property / Pathway
 
Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / rank
 
Normal rank
Property / Pathway: Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP / qualifier
 
Property / Pathway
 
Property / Pathway: Coenzyme A biosynthesis, pantothenate => CoA / rank
 
Normal rank
Property / Pathway: Coenzyme A biosynthesis, pantothenate => CoA / qualifier
 
Property / Pathway
 
Property / Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA / rank
 
Normal rank
Property / Pathway: Pyruvate oxidation, pyruvate => acetyl-CoA / qualifier
 
Property / Pathway
 
Property / Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc / rank
 
Normal rank
Property / Pathway: UDP-Glc biosynthesis, Glc => UDP-Glc / qualifier
 
Property / Pathway
 
Property / Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P / rank
 
Normal rank
Property / Pathway: Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P / qualifier
 
Property / Pathway
 
Property / Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man / rank
 
Normal rank
Property / Pathway: GDP-Man biosynthesis, Fru-6P => GDP-Man / qualifier
 
Property / Pathway
 
Property / Pathway: Tryptophan degradation / rank
 
Normal rank
Property / Pathway: Tryptophan degradation / qualifier
 
Property / Pathway
 
Property / Pathway: Aspartate degradation I / rank
 
Normal rank
Property / Pathway: Aspartate degradation I / qualifier
 
Property / Pathway
 
Property / Pathway: Threonine degradation II / rank
 
Normal rank
Property / Pathway: Threonine degradation II / qualifier
 
Property / Pathway
 
Property / Pathway: Pyruvate:ferredoxin oxidoreductase / rank
 
Normal rank
Property / Pathway: Pyruvate:ferredoxin oxidoreductase / qualifier
 
Property / Pathway
 
Property / Pathway: Acetate to acetyl-CoA / rank
 
Normal rank
Property / Pathway: Acetate to acetyl-CoA / qualifier
 
Property / Pathway
 
Property / Pathway: Hydrogen metabolism / rank
 
Normal rank
Property / Pathway: Hydrogen metabolism / qualifier
 
Property / Ecosystem
 
Property / Ecosystem: insect gut metagenome / rank
 
Normal rank
Property / Ecosystem: insect gut metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: insect gut metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: mouse gut metagenome / rank
 
Normal rank
Property / Ecosystem: mouse gut metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: mouse gut metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: human vaginal metagenome / rank
 
Normal rank
Property / Ecosystem: human vaginal metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: human vaginal metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: freshwater metagenome / rank
 
Normal rank
Property / Ecosystem: freshwater metagenome / qualifier
 
Prevalence (%): 0.2
Amount0.2
Unit1
Property / Ecosystem: freshwater metagenome / qualifier
 
Relative abundance (%): 0.01
Amount0.01
Unit1
Property / Ecosystem
 
Property / Ecosystem: coral metagenome / rank
 
Normal rank
Property / Ecosystem: coral metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: coral metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: pig gut metagenome / rank
 
Normal rank
Property / Ecosystem: pig gut metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: pig gut metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: chicken gut metagenome / rank
 
Normal rank
Property / Ecosystem: chicken gut metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: chicken gut metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: marine metagenome / rank
 
Normal rank
Property / Ecosystem: marine metagenome / qualifier
 
Prevalence (%): 0.1
Amount0.1
Unit1
Property / Ecosystem: marine metagenome / qualifier
 
Relative abundance (%): 0.07
Amount0.07
Unit1
Property / Ecosystem
 
Property / Ecosystem: plant metagenome / rank
 
Normal rank
Property / Ecosystem: plant metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: plant metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: soil metagenome / rank
 
Normal rank
Property / Ecosystem: soil metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: soil metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: human oral metagenome / rank
 
Normal rank
Property / Ecosystem: human oral metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: human oral metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: activated sludge metagenome / rank
 
Normal rank
Property / Ecosystem: activated sludge metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: activated sludge metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: wastewater metagenome / rank
 
Normal rank
Property / Ecosystem: wastewater metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: wastewater metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: rhizosphere metagenome / rank
 
Normal rank
Property / Ecosystem: rhizosphere metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: rhizosphere metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: marine sediment metagenome / rank
 
Normal rank
Property / Ecosystem: marine sediment metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: marine sediment metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: human lung metagenome / rank
 
Normal rank
Property / Ecosystem: human lung metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: human lung metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: bovine gut metagenome / rank
 
Normal rank
Property / Ecosystem: bovine gut metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: bovine gut metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: human skin metagenome / rank
 
Normal rank
Property / Ecosystem: human skin metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: human skin metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / Ecosystem
 
Property / Ecosystem: human gut metagenome / rank
 
Normal rank
Property / Ecosystem: human gut metagenome / qualifier
 
Prevalence (%): 0
Amount0
Unit1
Property / Ecosystem: human gut metagenome / qualifier
 
Relative abundance (%): 0
Amount0
Unit1
Property / MAGs
 
Property / MAGs: no MAG matches found / rank
 
Normal rank

Latest revision as of 04:13, 18 August 2026

genome assembly
Language Label Description Also known as
default for all languages
No label defined
    English
    GCA_017608575.1
    genome assembly

      Statements

      no current description - please contribute here
      0 references
      0 references
      0 references
      24.726775956284154
      5.454545454545454
      6.640000000000001
      0 references
      24.60515378221114
      3.56065178032589
      1.9299999999999997
      0 references
      24.57813646368305
      3.521809369951535
      11.290000000000003
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      23.898431665421956
      1.2564432989690721
      4.109999999999999
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      23.83763837638376
      1.200519143413368
      5.609999999999999
      0 references
      23.67879203843514
      1.2254901960784315
      4.3700000000000045
      0 references
      0 references
      23.579545454545457
      4.893846707448723
      3.769999999999996
      0 references
      23.517241379310345
      0.8101851851851851
      5.460000000000001
      0 references
      23.319615912208505
      4.5877446262431825
      5.840000000000003
      0 references
      23.278921220723916
      3.497109826589596
      4.880000000000003
      0 references
      0 references
      23.1410701876303
      3.585071995298266
      4.960000000000001
      0 references
      0 references
      23.045267489711936
      1.1814601635867918
      4.460000000000001
      0 references
      0 references
      23.045267489711936
      1.0098010098010097
      4.8700000000000045
      0 references
      22.923816060398078
      2.021174205967276
      0.980000000000004
      0 references
      0 references
      22.56305385139741
      4.055390702274975
      11.259999999999998
      0 references
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      22.162162162162165
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      0 references
      22.08504801097394
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      0 references
      0 references
      21.88811188811189
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      0 references
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      0 references
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      0 references
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      0 references
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